DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIA and Ir68a

DIOPT Version :10

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster


Alignment Length:495 Identity:95/495 - (19%)
Similarity:191/495 - (38%) Gaps:117/495 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   453 EKYEGYAVDLISKLSELMEF-----------DYEFMIVNGN-----GKYNPETKQWDG--IIRKL 499
            :.::|..|::::.|.:.:.|           :.::..::|.     |..||:....:|  |...|
  Fly   242 KSFQGVEVEIMNALGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSML 306

  Fly   500 ID----HHAQIGVCDLTITQMRRSVVDFTVPFMQLGISILHYKSPPEPKNQFAFLEPFAVEVWIY 560
            :|    |.|:..:.||.:.|:...:|:.:.|.....::.|..:|..:...| .|:.||:..:|:.
  Fly   307 VDEVAAHSARFAIGDLHLFQVYLKLVELSAPHNFECLTFLTPESSTDNSWQ-TFILPFSAGMWVG 370

  Fly   561 MIFAQLIMTLAFVFIARLS----------YREWLPPNPAI-QDPDELENIW-------------- 600
            ::.:..::...|..|:.|:          :...|.||..: .||.....|.              
  Fly   371 VLLSLFVVGTVFYAISFLNAIINGNVSSEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSSKGD 435

  Fly   601 --------NVNNSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFALMMLSTYTANLAAFLTSNK 657
                    ...|...|....::......:||...:|:|||.:|.:.:::::||.|:..|.|.:..
  Fly   436 RMPRDLFDGYTNCILLTYSMLLYVALPRMPRNWPLRVLTGWYWIYCILLVATYRASFTAILANPA 500

  Fly   658 WQSSIKSLQDLIEQDKVHFGSMRGGSTS-LFFSESNDTDYQRAWNQMKDFNPS-AFTSTNKEG-- 718
            .:.:|.:|:||:   :.|.....|.:.: .||.|:||...::...:|:.|..| ..||...:|  
  Fly   501 ARVTIDTLEDLL---RSHIPPSTGATENRQFFLEANDEVARKVGEKMEVFGYSDDLTSRIAKGQC 562

  Fly   719 ----------VARVRKEKGGYAFLMETTSLTYNIERNCDLTQIGEQIGEKHYGLAVPLGSDYRTN 773
                      ..||..|.|....:|:...|...:.                  ||:...|..:..
  Fly   563 AYYDNEFYLRYLRVADESGSALHIMKECVLYMPVV------------------LAMEKNSALKPR 609

  Fly   774 LSVSILQLSERGELQKMKNKWWKNHNVTCDSYHEVDGDEL-------SIIELGGVFLVLAGGVLI 831
            :..||..|:|.|.:.    ||.|      |:...:..:.|       :|.:....|:.|    ||
  Fly   610 VDASIQHLAEGGLIA----KWLK------DAIEHLPAEALAQQEALMNIQKFWSSFVAL----LI 660

  Fly   832 GVILGIFEFL---WNVQNVAVEERVTPWQAFKAELIFALK 868
            |.::.:...|   |:.:::.::..:  :..:...|.:..|
  Fly   661 GYVISMLTLLAERWHFKHIVMKHPM--YDVYNPSLYYNFK 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..405 CDD:380605
PBP2_iGluR_Kainate 426..796 CDD:270432 82/411 (20%)
Lig_chan 555..828 CDD:459656 63/326 (19%)
Ir68aNP_648455.2 Lig_chan 367..661 CDD:459656 64/328 (20%)
Blue background indicates that the domain is not in the aligned region.

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