DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIA and Grik3

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001106187.1 Gene:Grik3 / 298521 RGDID:71027 Length:919 Species:Rattus norvegicus


Alignment Length:923 Identity:284/923 - (30%)
Similarity:473/923 - (51%) Gaps:92/923 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ITVGAIF-YEN--EKEIELSFDQAFR---EVNNMKFSELRFVTIK---RYMPTNDSFLLQQITCE 87
            |.:|.|| |.:  ..::..:.:.|||   .:.|...:.|...|:.   :.:..:|||...:..|:
  Rat    36 IRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACD 100

  Fly    88 LISNGVAAIFGPSSKAASDIVAQIANATGIPHIEYDLKLEATRQEQLNHQMS------INVAPSL 146
            .::.||.||||||..:.::.|..|.||..:|||:...|         :|.:.      :|:.|..
  Rat   101 QLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWK---------HHPLDNKDTFYVNLYPDY 156

  Fly   147 SVLSRAYFEIIKSNYEWRTFTLIYETPEGLARLQDLMNIQALNSDYVKLRNLADYADDYRILWKE 211
            :.||.|..::::| .:||:.|::|:...||.|||:|:...:..:..:|:|.|...:||.|.|.||
  Rat   157 ASLSHAILDLVQS-LKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPIDSDDSRPLLKE 220

  Fly   212 TDETFHEQRIILDCEPKTLKELLKVSIDFKLQGPFRNWFLTHLDTHNSGLRDIYNEDFK---ANI 273
            . :...|.|||.||......::||.::...:...:.::..|.||.:...|     |.::   .|:
  Rat   221 M-KRGREFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTTLDLYALDL-----EPYRYSGVNL 279

  Fly   274 TSVRLKVVDANP----------FERKKTRLTKVDQILGNQTML-PILIYDAV----VLFASSARN 323
            |..|:..|| ||          .||.:........:|....|. ..|:||||    |.:..:.:.
  Rat   280 TGFRILNVD-NPHVSAIVEKWSMERLQAAPRAESGLLDGVMMTDAALLYDAVHIVSVCYQRAPQM 343

  Fly   324 VIAAMQPFHPPNRHCGSSSPWMLGAFIVNEMKTISEDDVEPHF---KTENMKLDEYGQRIHFNLE 385
            .:.::|        |.....|..|...:|.:|....:.:....   ||..::.|       |:|:
  Rat   344 TVNSLQ--------CHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTD-------FDLD 393

  Fly   386 I--YKPTVNEPMMVWTPDNGIKKRLLNLELESAGTTQDFSEQ--RKVYTVVTHYEEPYFMMKEDH 446
            |  .|....|.:.||:|.:|     ||:...:.|...:.::.  .:...|.|..|||:.|.::..
  Rat   394 IISLKEDGLEKVGVWSPADG-----LNITEVAKGRGPNVTDSLTNRSLIVTTLLEEPFVMFRKSD 453

  Fly   447 ENFRGREKYEGYAVDLISKLSELMEFDYEFMIVNGNGKYNPETK--QWDGIIRKLIDHHAQIGVC 509
            ....|.:::|||.:||:.:|:.::.|.||..:|. :|||..:..  ||:|::::||||.|.:.|.
  Rat   454 RTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVE-DGKYGAQDDKGQWNGMVKELIDHKADLAVA 517

  Fly   510 DLTITQMRRSVVDFTVPFMQLGISILHYKSPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLAFVF 574
            .||||.:|...:||:.|||.||:|||:.|......:.|:||.|.:.::|:|::.|.|.::.....
  Rat   518 PLTITHVREKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLNPLSPDIWMYVLLAYLGVSCVLFV 582

  Fly   575 IARLSYREWLPPNPAIQDPDELENIWNVNNSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFAL 639
            |||.|..||...:|.....:.:||.:.:.||.|..:||:||||.:::|:....||:.|:||||.|
  Rat   583 IARFSPYEWYDAHPCNPGSEVVENNFTLLNSFWFGMGSLMQQGSELMPKALSTRIIGGIWWFFTL 647

  Fly   640 MMLSTYTANLAAFLTSNKWQSSIKSLQDLIEQDKVHFGSMRGGSTSLFFSESNDTDYQRAWNQMK 704
            :::|:||||||||||..:.:|.|.|..||.:|.|:.:|:::.|:|..||.:|..:.:::.|..|.
  Rat   648 IIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMWAFMS 712

  Fly   705 DFNPSAFTSTNKEGVARVRKEKGGYAFLMETTSLTYNIERNCDLTQIGEQIGEKHYGLAVPLGSD 769
            . .|||....|:||:.|..  ...||.|||:|::.|..:|||:|||||..|..|.||:..|:||.
  Rat   713 S-KPSALVKNNEEGIQRTL--TADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSP 774

  Fly   770 YRTNLSVSILQLSERGELQKMKNKWWKNHNVTCDSYHEVDGDELSIIELGGVFLVLAGGVLIGVI 834
            ||..::::||||.|..:|..||.|||:...  |......:...|.|.::||:|:|||.|:::.|:
  Rat   775 YRDKITIAILQLQEEDKLHIMKEKWWRGSG--CPEEENKEASALGIQKIGGIFIVLAAGLVLSVL 837

  Fly   835 LGIFEFLWNVQNVAVEERVTPWQAFKAELIFALKFWVRKK-----PMRISSSSDKSSSRRSSGSR 894
            :.:.||::.::..|..|:.:.......|:.|:|....|.|     ||.:  .:|...:..:...|
  Rat   838 VAVGEFIYKLRKTAEREQRSFCSTVADEIRFSLTCQRRLKHKPQPPMMV--KTDAVINMHTFNDR 900

  Fly   895 RSSKEKSRSKTVS 907
            |...:.|.|.:.|
  Rat   901 RLPGKDSMSCSTS 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 103/408 (25%)
ANF_receptor 46..386 CDD:279440 93/372 (25%)
PBP2_iGluR_Kainate 426..796 CDD:270432 147/371 (40%)
Lig_chan 556..828 CDD:278489 108/271 (40%)
Grik3NP_001106187.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 107/417 (26%)
ANF_receptor 55..398 CDD:279440 94/374 (25%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 147/371 (40%)
Lig_chan 564..832 CDD:278489 108/272 (40%)
Glutamate binding 690..692 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349733
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.650

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