DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIA and Grik5

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_006228444.1 Gene:Grik5 / 24407 RGDID:2735 Length:980 Species:Rattus norvegicus


Alignment Length:906 Identity:269/906 - (29%)
Similarity:441/906 - (48%) Gaps:98/906 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LEGIIALGGDDRNEITVGAIFYENEKEIELSFDQAFREVNNMKFSELRFVTIKRYMPTNDSFLLQ 82
            :.|||.:....|.|:.:          .||..|..:...:.|                       
  Rat    51 INGIIEVPAKARVEVDI----------FELQRDSQYETTDTM----------------------- 82

  Fly    83 QITCELISNGVAAIFGPSSKAAS-DIVAQIANATGIPHIEYDLKLEATRQEQLNHQMSINVAPSL 146
               |:::..||.::.||||..|| ..|:.|.....||||:  :..|.|.:.|.....|:::.||.
  Rat    83 ---CQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIK--VGPEETPRLQYLRFASVSLYPSN 142

  Fly   147 SVLSRAYFEIIKSNYEWRTFTLIYETPEGLARLQDLMNIQALNSDYVKLRNLADYADDYRILWKE 211
            ..:|.|...|:|| :.:.:.:||....|.|.||::|:....::.:.:.:|.|.|..|...:|.:.
  Rat   143 EDVSLAVSRILKS-FNYPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDSRDPTPLLKEI 206

  Fly   212 TDETFHEQRIILDCEPKTLKELLKVSIDFKLQGPFRNWFLTHLD---THNSGLRDIYNEDFKANI 273
            .|:..  ..||:|........:|:.:.:..:...|..:.||.:|   .|..|:    .|| .:||
  Rat   207 RDDKV--STIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLDGI----VED-SSNI 264

  Fly   274 TSVRLKVVDANPFERKKTRLTKVD-------QILGNQTMLPILIYDAVVLFASSARNVIAAMQPF 331
            ....: ...::||..:..|...:.       .......:...|::|||.:..|:.|.:..:.:..
  Rat   265 LGFSM-FNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQEIG 328

  Fly   332 HPPNRHCGSSSPWMLGAFIVNEMKTISEDDVEPHFKTENMKLDEYGQRIHFNLEIYKPT--VNEP 394
            ..| ..|.|::.|..|..::|.::.:..|.:     |..::.:..|||.::.|.|.:.:  .:..
  Rat   329 VKP-LACTSANIWPHGTSLMNYLRMVEYDGL-----TGRVEFNSKGQRTNYTLRILEKSRQGHRE 387

  Fly   395 MMVWTPDNGIKKRLLNLELESAGTTQDFSEQRKVYTVVTHYEEPYFMMKEDHENFRGREKYEGYA 459
            :.||..:..:......|::..:.|..:     |...|.|..|.||.|.:.:.:...|.|::||:.
  Rat   388 IGVWYSNRTLAMNATTLDINLSQTLAN-----KTLVVTTILENPYVMRRPNFQALSGNERFEGFC 447

  Fly   460 VDLISKLSELMEFDYEFMIVNGNGKYN-PETK-QWDGIIRKLIDHH-AQIGVCDLTITQMRRSVV 521
            ||::.:|:||:.|.|...:|. :|.|. ||.. .|.|::.:||:.. |.:.|...|||..|..|:
  Rat   448 VDMLRELAELLRFRYRLRLVE-DGLYGAPEPNGSWTGMVGELINRQKADLAVAAFTITAEREKVI 511

  Fly   522 DFTVPFMQLGISILHYKSPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLAFVFIARLSYREWLPP 586
            ||:.|||.||||||:..........|:||:||:..||::|:.|.|.::......||||..||..|
  Rat   512 DFSKPFMTLGISILYRVHMGRKPGYFSFLDPFSPAVWLFMLLAYLAVSCVLFLAARLSPYEWYNP 576

  Fly   587 NPAIQ-DPDELENIWNVNNSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFALMMLSTYTANLA 650
            :|.:: .|..|||.:.:.||.|..||..||||.:|:||....|.::|:||.|.|:::|:||||||
  Rat   577 HPCLRARPHILENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGVWWAFTLIIISSYTANLA 641

  Fly   651 AFLTSNKWQSSIKSLQDLIEQDKVHFGSMRGGSTSLFFSESNDTDYQRAWNQMKDFNPSAFTSTN 715
            ||||..:.:..::|..||.:|..:.:|::..|||..||..|....|||.||.|:...||.|..:.
  Rat   642 AFLTVQRMEVPVESADDLADQTNIEYGTIHAGSTMTFFQNSRYQTYQRMWNYMQSKQPSVFVKST 706

  Fly   716 KEGVARVRKEKGGYAFLMETTSLTYNIERNCDLTQIGEQIGEKHYGLAVPLGSDYRTNLSVSILQ 780
            :||:|||...:  ||||:|:|...|:...||:|||||..:..|.||:.:||||.:|..::::|||
  Rat   707 EEGIARVLNSR--YAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPFRDEITLAILQ 769

  Fly   781 LSERGELQKMKNKWWKNHNVTCDSYHEVDGDELSIIELGGVFLVLAGGVLIGVILGIFEFLWNVQ 845
            |.|...|:.:|.|||:......:..|...|  |.:..:||:|:||..|::|.|.:.:.||:|:.:
  Rat   770 LQENNRLEILKRKWWEGGRCPKEEDHRAKG--LGMENIGGIFVVLICGLIIAVFVAVMEFIWSTR 832

  Fly   846 NVAVEERVTPWQAFKAELIFALKFWVRKKPMRISSSSDKSSSRRSSGSRRSSKEKSRSKTV 906
            ..|..|.|:..|....||..|:                  |.|::|.|||..:....|:.:
  Rat   833 RSAESEEVSVCQEMLQELRHAV------------------SCRKTSRSRRRRRPGGPSRAL 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 81/383 (21%)
ANF_receptor 46..386 CDD:279440 78/350 (22%)
PBP2_iGluR_Kainate 426..796 CDD:270432 152/373 (41%)
Lig_chan 556..828 CDD:278489 111/272 (41%)
Grik5XP_006228444.1 PBP1_iGluR_Kainate_KA1_2 23..401 CDD:380616 86/402 (21%)
Periplasmic_Binding_Protein_Type_2 414..785 CDD:389745 152/378 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349753
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.650

Return to query results.
Submit another query.