DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIA and W02A2.5

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_502564.2 Gene:W02A2.5 / 189098 WormBaseID:WBGene00012190 Length:487 Species:Caenorhabditis elegans


Alignment Length:519 Identity:101/519 - (19%)
Similarity:193/519 - (37%) Gaps:155/519 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   455 YEGYAVDLISKLSELMEFDYEFM------IVNG--------NGKYNPETKQWDGIIRKLIDHHAQ 505
            :.|:.::::..:::.::  :|.:      ||.|        ||       .|.|::..|     |
 Worm    36 FPGWTMEVLKMITDSLK--WEIIPVVTPTIVGGLDWGTLQKNG-------TWSGVLGYL-----Q 86

  Fly   506 IGVCDLTI-----TQMRRSVVDFTVPFMQL-GISILHYKSPPEPKNQFAFLEPFAVEVWIYMIFA 564
            .|..|...     |..|....:::.|...: .:.:...|:.......:...:||:||||:.:: |
 Worm    87 NGTADAVALMYQKTDTRNEYFEYSYPVTNVQPVFVARKKTETLGSVLWNAFKPFSVEVWLCLL-A 150

  Fly   565 QLIMTL---------AFVFIARLSYREWLPPNPAIQDPDELENIWNV-----------------N 603
            .|::.|         .|..:.|..:|.|             |.:|:|                 :
 Worm   151 SLVLNLLIMIAISGIEFKLLFRSRFRPW-------------EMLWHVVQLQLDEKSDDMLFYTLS 202

  Fly   604 NSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFALMMLSTYTANLAAFLTSNKWQ--SSIKSLQ 666
            .:..|.|.:::|.|  ||     :.:..||.              |.|.:|||...  ::...:.
 Worm   203 GNIVLFVFALLQSG--IL-----IEVYKGML--------------LTALITSNGDNPFANADEMI 246

  Fly   667 DLIEQDKVHFGSMRGGSTSLFFSESNDTDYQ-----RAWNQMKDFNPSAFTSTNKEGVARVRKEK 726
            .||.:.|.|..:...|  :.:|.:...:|.|     ||........|:|..|...:.|     :.
 Worm   247 KLIGEKKYHLTTNYMG--NWYFDDLQHSDQQHFVSLRAATASNPVIPAASVSAALDLV-----DS 304

  Fly   727 GGYAFLMETTSLTYNIER-NCDLTQIGEQIGE--------KHY-GLAVPLGSDYRTNLSVSILQL 781
            |.|.:.::..||...:.: .|:...:.:.:.:        |:: |:|     ::.|.:      :
 Worm   305 GKYIYPIQQDSLAMQMSKERCNYVYVSDGMPQVSSFFVFTKNFSGIA-----EFNTQI------I 358

  Fly   782 SERGELQKMKNKWWKNHNV------TCDSYHEVDGD---ELSIIELGGVFLVLAGGVLIGVILGI 837
            ..:..:|:..||:: |...      .|:.......|   .|.|..:.|||.:.|.||...:::.:
 Worm   359 MNQAFIQRTFNKYF-NEGFKLGFIPKCEVTEPTASDATKPLDIESVIGVFTIGALGVAASLMVFV 422

  Fly   838 FEF--LWNVQNVAVEERV-TPWQAFKAELIFALKFWVRKK-----PMRI-------SSSSDKSS 886
            ||.  .|:|:.:|...|: .||.......|..:.|...::     .||:       |||||.|:
 Worm   423 FEIYHYWHVRILARRARMRDPWNVRNLARIAQIHFTTHEQYSDIDVMRLVDAFNATSSSSDTST 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377
ANF_receptor 46..386 CDD:279440
PBP2_iGluR_Kainate 426..796 CDD:270432 72/403 (18%)
Lig_chan 556..828 CDD:278489 61/323 (19%)
W02A2.5NP_502564.2 Lig_chan-Glu_bd <36..86 CDD:214911 10/63 (16%)
Periplasmic_Binding_Protein_Type_2 <74..>124 CDD:304360 11/61 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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