DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIA and F59E12.8

DIOPT Version :10

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001364714.1 Gene:F59E12.8 / 186629 WormBaseID:WBGene00019123 Length:379 Species:Caenorhabditis elegans


Alignment Length:184 Identity:41/184 - (22%)
Similarity:78/184 - (42%) Gaps:30/184 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   513 ITQMRRSVVDFTVPFMQLGISILHYKSPPEPKNQFAFL-EPFAVEVWIYMIFAQLIMTLAFVFIA 576
            :|..|.:|:.||.| .|..::.::..:.|:......|| .||:..||:.:....|::.:.| ||.
 Worm    19 MTADRANVLTFTYP-TQFEVNQVYLITDPQKSVDVVFLFHPFSTTVWLLLSLTVLVVAIVF-FIL 81

  Fly   577 RL----SYREWLPPNPAIQDPDELENIWNVNNSTWLMVGSIMQQGCDILPRGPHMRILTGMW--- 634
            |.    |.:|.......||:     :|:.|..||:.:...:.::.....     ..:.:.:|   
 Worm    82 RFVEFKSTKETESSYECIQN-----SIFQVLLSTFNLEIRVAKKSTFFA-----FHLFSTIWLLA 136

  Fly   635 WFFALMMLSTYTANLAAFL-TSNKWQSSIKSLQDLIEQDKVHFGSMRGGSTSLF 687
            ||.  :.:..||:.|:..: .|:|.|....:....|:.       :|.|:..||
 Worm   137 WFH--VFIDFYTSELSGMMVVSDKRQVPFDNFYGFIDH-------LRKGNYRLF 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..405 CDD:380605
PBP2_iGluR_Kainate 426..796 CDD:270432 41/184 (22%)
Lig_chan 555..828 CDD:459656 29/141 (21%)
F59E12.8NP_001364714.1 None
Blue background indicates that the domain is not in the aligned region.

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