DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIA and C08B6.5

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_505601.1 Gene:C08B6.5 / 182390 WormBaseID:WBGene00007426 Length:423 Species:Caenorhabditis elegans


Alignment Length:332 Identity:75/332 - (22%)
Similarity:128/332 - (38%) Gaps:69/332 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   457 GYAVDLISKLSELMEFDY-------EFMIVNGNGKYNPETKQWDGIIRKLIDHHAQIGVCDLTIT 514
            |..:::||.:.:::::.:       ||.:||..|...|: ..:.||:..|......:....:.||
 Worm    10 GAEIEIISMVMQILDWQWEVIDTEKEFNVVNDFGNPQPD-GNFSGIMGLLAQDKIDMSGLSMRIT 73

  Fly   515 QMRRSVVDFTVP---FMQLGISILHYKSPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLAFVFIA 576
            ..|.....||.|   |.|:.|    .|.|.|...:.....||..::|:.::  ..||..:.:..|
 Worm    74 PARMEFAHFTFPIRYFQQVYI----IKRPAENDFRNFVFAPFTTDMWLLLL--ATIMGASTMRFA 132

  Fly   577 RLSYREWLPPNPAIQDPDELENIWNVNNSTWLMVGSIM--QQGCDILPRGPHMRILTGMWWFFAL 639
            ...|  |         ...:.:.:|:..|:.|....:|  |:..|  |......:|.| :...|:
 Worm   133 CALY--W---------DSRVGSKFNIYTSSVLETFGLMLKQRVQD--PTAVSTMLLEG-FLIVAM 183

  Fly   640 MMLSTY-----TANLAA-------FLTSNKWQSSIKSLQDLIEQDKVHFGSMRGGSTSLFFSESN 692
            |.::.|     .:.|.|       ||..|:   .|:.|.|.......:|.....|||     |.|
 Worm   184 MSIAQYYQTSMNSRLTAPPSSRIPFLHQNQ---LIELLLDKETYLTYYFNLTLEGST-----EKN 240

  Fly   693 DTDYQRAWNQMKDFNPSAFTSTNKEGVARVRKEKGGYAFLMETTSLTYNIERNCDLTQIGEQIGE 757
            :.:.:||    ...||....:...:.:..:  :|||..:      .||:||   .|.| ...:.:
 Worm   241 EYNIKRA----LAMNPIVVRAREADLIKEI--QKGGVFY------STYDIE---FLPQ-AVSVWD 289

  Fly   758 KHYGLAV 764
            |..||.|
 Worm   290 KRQGLTV 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377
ANF_receptor 46..386 CDD:279440
PBP2_iGluR_Kainate 426..796 CDD:270432 75/332 (23%)
Lig_chan 556..828 CDD:278489 49/223 (22%)
C08B6.5NP_505601.1 Periplasmic_Binding_Protein_Type_2 13..>116 CDD:304360 25/107 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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