DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIA and glr-8

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001368711.1 Gene:glr-8 / 180924 WormBaseID:WBGene00001619 Length:547 Species:Caenorhabditis elegans


Alignment Length:527 Identity:125/527 - (23%)
Similarity:208/527 - (39%) Gaps:103/527 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   364 PHFKTENMKLDEYGQRIHFNL--EIYKPTVNEPMMVWTPDNGIKKRLLNLELESAGTTQDFS--- 423
            |.|  ||...|....|...|:  .|.:...:.|....|.|.|....|.|        .:.||   
 Worm     4 PEF--ENTTADPNSIRTLNNILESINEKVAHPPQTSLTSDYGDAYTLSN--------EKHFSLSE 58

  Fly   424 -EQRKVYTVVTHYEEPYFMMKEDHENFRGREKYE-----GYAVDLISKLSELMEFDYEFMIVNGN 482
             :.|.:..||...|.||.    ::.||......:     |..::::.::.:.:...||.:...|:
 Worm    59 MKGRTLKMVVPAIEPPYV----NYVNFSDAAVTDKGYGPGVVMEILKEIGKRLNLTYEILPALGS 119

  Fly   483 --GKYNPETKQWDGIIRKLIDHHAQIGVCDL----TITQMRRSVV-DFTVPFM--QLGISILHYK 538
              |:|  ....|.|...:|:.     |..||    .|.:..|||: |.|.||.  ..||.|   :
 Worm   120 TWGEY--LNGSWTGAFGQLVR-----GEVDLLAGGAIMEYDRSVIADLTYPFQFEPTGIMI---R 174

  Fly   539 SPPEPKNQFAFL--EPFAVEVWIYMIFAQLIMTLAFVF-----IARLSYREWLPPNPAIQDPDEL 596
            ||.:.::....:  |||:.|||:  |.|.:|:....:|     |.|..|.| :...|.       
 Worm   175 SPEKYEDDTLLIVTEPFSWEVWV--ITAAVILISGVIFLVMTNIIRKVYEE-MTVTPF------- 229

  Fly   597 ENIWNVNNSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFALMMLSTYTANLAAFLTSNKWQSS 661
                   .|.|:.....:|||....||....|:|..:||..::.:.:|:|.:|.|....:|....
 Worm   230 -------ESIWVFFSIFVQQGLPEQPRSWSCRVLVALWWLASITLSATFTGSLVALFAVDKTNVP 287

  Fly   662 IKSLQDLIEQDKVHFGSMRGGSTSLFFSESNDTD-----------YQRAWNQMKDFNPSAFTSTN 715
            .:::..|:.       .::.|...:...|::.|.           |:..|::|...:...:.:..
 Worm   288 FQNIDQLVR-------LVKQGKFEIVMDENSFTRTEMIARSKLPVYRDLWHEMIVNHKVKYVNGI 345

  Fly   716 KEGVARVRKEKGGYAFLMETTSLTYNIERNCDLTQIGEQIGEKHYGLAVPL--GSDYRTNLSVSI 778
            ..|||.||... |||.|....:|.:....:|.:....:.|...:  |::||  .|.|....|..|
 Worm   346 ARGVAFVRANP-GYALLGPMATLNFYAYSDCKVILFNDGILPVY--LSIPLVKNSIYSPYFSTKI 407

  Fly   779 LQLSERGELQKMKNKWWKNHN--VTCDSYHEVDGDEL---SIIEL---GGVFLVLAGGVLIGVIL 835
            .::.|||..|    ||..::.  |.....:|.:...:   |.::|   .|.|.|..||..:|:.|
 Worm   408 REMVERGFTQ----KWIADYRSYVAMQKINECNSTTIGPKSYLDLKRAQGAFWVFLGGAGLGLAL 468

  Fly   836 GIFEFLW 842
            .:.||::
 Worm   469 FVGEFIF 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 11/41 (27%)
ANF_receptor 46..386 CDD:279440 7/23 (30%)
PBP2_iGluR_Kainate 426..796 CDD:270432 96/403 (24%)
Lig_chan 556..828 CDD:278489 67/297 (23%)
glr-8NP_001368711.1 PBP2_iGluR_ligand_binding 62..424 CDD:270219 96/406 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.770

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