DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIA and nmr-2

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001256640.1 Gene:nmr-2 / 180002 WormBaseID:WBGene00003775 Length:990 Species:Caenorhabditis elegans


Alignment Length:1055 Identity:233/1055 - (22%)
Similarity:403/1055 - (38%) Gaps:257/1055 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YAFIIIIGFLE--GIIALGG---------DDRNEITVGAIFYENEKEIELSFDQAFREV-----N 57
            :..:::..|.|  ..|.|||         |.:.|....|:.|::......|:|:||:||     :
 Worm     7 FILLLLATFFEKNQSIDLGGSRKVQKPKEDPKREDVNIAVVYQHYAGRSKSYDKAFKEVIRKIND 71

  Fly    58 NMKFSELR-------FVTIKRYMPTNDSFLLQQITC---ELISNGVAAIF-------GPSSKAAS 105
            ....|.||       |..:...:||...|:.:.:.|   .:.||.||.|.       ..|:.||.
 Worm    72 ATAVSSLRRLATRYNFQAVDCILPTGTFFVKEVLDCLCNNVTSNNVALIIFVTASETYDSTTAAE 136

  Fly   106 DIVAQIANATGIPHIEYDL-KLEATRQEQLNHQMSINVAPSLSVLSRAYFEIIKSNYEWRTFTLI 169
            ......|:.||||.|.::. ....|.:..|.....|.:||.:...:||...::: .|.|..|.::
 Worm   137 QYFLTAASYTGIPIIAWNADNAGFTFENDLGPYRIIQMAPPIEHQARAMLALLR-RYNWPKFGVV 200

  Fly   170 YETPEGLARLQDLMNIQALNSDYVKLRNLADYADDYRILWKETDETFHEQRIILDCEPKTLKELL 234
            .....|             |..:|                     |...:.:.|.....|..|::
 Worm   201 TSEMAG-------------NDRFV---------------------TAIREELELFSNKSTKFEMI 231

  Fly   235 KVSIDFKLQGPFRNWFLTHLDTHNSGLRDIYNEDFKANITSVRLKVVDANPFERKKTRLTKVDQI 299
            ..|               |::|.|....|:...|.|.|...:.|...:|.......:...|:|.|
 Worm   232 HFS---------------HMNTKNDTDVDLKLADVKKNQAKIILLYANAAQAGTIFSHAEKMDMI 281

  Fly   300 ------------LGNQT----------------------------MLPILIYDAVVLFASSARNV 324
                        .|.||                            :||::|..|..||.      
 Worm   282 GEKYLWIGTQSVKGTQTTVKAPAQAGMLCVNFHTVSNAMFAPRDDILPLIIQLAPKLFG------ 340

  Fly   325 IAAMQPFHP-------PNRHCGSSSP---WMLGAFIVNEMKT-------ISEDDVEPHF-----K 367
             ||:....|       .|..|.|...   |..|.:|...||.       ...||....|     |
 Worm   341 -AALLQLRPNEMFSLKSNVSCKSEDGDPYWDNGKYIYEHMKAAFVKGNPFHVDDGHDSFFYTFEK 404

  Fly   368 T----------ENMKLDEYGQRIHFNLEIYKPTVNEPMMV---WTPDNGIKKRLLNLELESAGTT 419
            |          .|::.:..|::....:.|:  |.||..|.   |..             |.|...
 Worm   405 TGRLRNSILQISNLRTNSKGEKTWEKVGIF--TNNELKMADVQWPG-------------EKANPP 454

  Fly   420 QDFSEQRKVYTVVTHYEEPYFMMKE---DHENFRGRE---------KY----------------E 456
            |..:::..| .|||.:|.|:..:.:   |.:...|.:         :|                .
 Worm   455 QGAADKFHV-KVVTLHEPPFIAVSDVDPDTQKCPGNQGSICDWGDVEYTDGAGVKKNRTLLKCCS 518

  Fly   457 GYAVDLISKLSELMEFDYEFMIVNGNGKYNPETKQ-WDGIIRKLIDHHAQIGVCDLTITQMRRSV 520
            ||.|||::||:..:.|.|....|. :.|:..:|:. |:|:|..|:.:.|.:.|..|.:...|...
 Worm   519 GYCVDLLNKLANDIGFTYTLYKVR-DEKWGLKTENGWNGLIADLMHNKADMCVTSLKLNSERARD 582

  Fly   521 VDFTVPFMQLGISILHYKSPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLAFVFIARLSYREWLP 585
            :||::||:..||||: .|......:..||||||....|:.::|..:.:....:|:.     ||:.
 Worm   583 IDFSLPFLDTGISII-VKIRSGVLSPTAFLEPFEYSTWVIILFVCIHVAAISIFLF-----EWVS 641

  Fly   586 P---NPAIQDPDELENIWNVNNSTWLMVGSIMQQGCDI-LPRGPHMRILTGMWWFFALMMLSTYT 646
            |   |.....|.  |:.:::..|.||:..::....... :|:....|::..:|..|.|..|:.||
 Worm   642 PYSFNMQKYPPP--EHKFSLFRSYWLVWATLFSASVSTDVPKSTVSRLMALVWAAFGLTFLAVYT 704

  Fly   647 ANLAAFLTSNKWQSSIKSLQDLI------EQDKVHFGSMRGGSTSLFFSESNDTDYQRAWNQMKD 705
            ||||||:.:......:..:.|.:      ::....||::.||:|       ::| .:|.|::|.:
 Worm   705 ANLAAFMITRVQYYDLSGIHDPMLNFPHDQKPPFRFGTVDGGNT-------HET-MKRNWHKMHE 761

  Fly   706 F--NPSAFTSTNKEGVARVRKEKGGYAFLMETTSLTY--NIERNCDLTQIGEQIGEKHYGLAVPL 766
            :  :...|......|:..|:.|:.. ||:.:...|.|  ..:.||.|..:|:......||:..|.
 Worm   762 YVKHNKYFRMNISAGIEAVKNEELD-AFIYDAVVLDYWAGKDANCALMTVGKWASMTGYGIGFPK 825

  Fly   767 GSDYRTNLSVSILQLSERGELQKMKNKWWKNHNVTCDSYHEVDGDELSIIELGGVFLVLAGGVLI 831
            .|.:.:.::..:||..::|:|::::| :|.....|.||:.:.....|.|......|::||||:::
 Worm   826 NSPHTSLVNHYMLQYQQKGDLERLQN-FWLTGACTPDSHSQTQSAPLGIENFLSAFVLLAGGIIV 889

  Fly   832 GVILGIFEFLWNVQNVAVEERVTP--W-----QAFKAELIFA-----LKFWVRKKPMRISSSSDK 884
            .||:..||.::.:......:::.|  |     .|....|.|.     ::.| |.:...::|::..
 Worm   890 SVIVLGFEHIYCMHLRKPLQKIDPNGWCGIISMAMGKSLTFTEAVDRVQEW-RSRTQSLASTNSP 953

  Fly   885 SSSRRSSGSRRSSKE 899
            ...||.|.:.|.::|
 Worm   954 QLKRRRSANLRPTEE 968

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 93/468 (20%)
ANF_receptor 46..386 CDD:279440 85/434 (20%)
PBP2_iGluR_Kainate 426..796 CDD:270432 101/412 (25%)
Lig_chan 556..828 CDD:278489 66/285 (23%)
nmr-2NP_001256640.1 rSAM_ocin_1 <54..>108 CDD:274893 13/53 (25%)
Periplasmic_Binding_Protein_type1 102..443 CDD:385651 77/399 (19%)
Periplasmic_Binding_Protein_Type_2 460..860 CDD:389745 102/419 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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