Sequence 1: | NP_523484.2 | Gene: | GluRIIA / 33788 | FlyBaseID: | FBgn0004620 | Length: | 907 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_579842.2 | Gene: | Grin3b / 170796 | RGDID: | 621705 | Length: | 1002 | Species: | Rattus norvegicus |
Alignment Length: | 885 | Identity: | 188/885 - (21%) |
---|---|---|---|
Similarity: | 320/885 - (36%) | Gaps: | 225/885 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 74 PTNDSFLLQQITCELIS--NGVAAIFGPSSKAASDIVAQIANATGIPHIEYDLKLEATRQE---- 132
Fly 133 ---QLNHQMSINVAPSLSVLSRAYFEIIKSNYEWRTFTLIYETPEGLARLQDLMNIQALNSDY-- 192
Fly 193 ------VKLRNLADYADDYR----ILWK-ETDETFHEQRIILDCEPKTLKELLKVSIDFKLQGPF 246
Fly 247 RNWFL-THLDTHNSGLRDIYNEDFKANITSVRLKVVDANPFERKKTRLTKVDQILG--NQTMLPI 308
Fly 309 LIYDAVVLFASSARNVIAAMQPFHPPN-------------------------RHCGSSS------ 342
Fly 343 -PWMLGAFIVNEMKTISEDDVEPHFKTENMKLDEYGQRIHFNLEIYKPTVNEPMMVWTPDNGIKK 406
Fly 407 RLLN-------LELESAGTTQDFSEQRKVYTVVTHYEEPYFMMKEDHEN---------------- 448
Fly 449 -----------FRG------REKYEGYAVDLISKLSELMEFDYEFMIVNGNGKYNP-ETKQWDGI 495
Fly 496 IRKLIDHHAQIGVCDLTITQMRRSVVDFTVPFMQLGISIL-HYKSPPEPKNQFAFLEPFAVEVWI 559
Fly 560 YMIFAQLIMTLAFVFIARLSYREWLPP---NPAIQDPDELENIWNVNNSTWLMVGSIMQQGCDIL 621
Fly 622 ---------PRGPHMRILTGMWWFFALMMLSTYTANLAAFLTSNKWQSSIKSLQDLIEQDKVHFG 677
Fly 678 SMRGGSTSLFFSESNDTDYQRAWNQMKDFNPSAFTSTNKEGVARVRKEKGGY-AFLMETTSLTY- 740
Fly 741 -NIERNCDLTQIGEQIGEKHYGLAVPLGSDYRTNLSVSILQLSERGELQKMKNKWWKNHNVTCDS 804
Fly 805 --YHEVDGDELSIIELGGVFLVLAGGVLIGVILGIFEFLW 842 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
GluRIIA | NP_523484.2 | PBP1_iGluR_Kainate | 33..404 | CDD:107377 | 67/386 (17%) |
ANF_receptor | 46..386 | CDD:279440 | 66/368 (18%) | ||
PBP2_iGluR_Kainate | 426..796 | CDD:270432 | 108/419 (26%) | ||
Lig_chan | 556..828 | CDD:278489 | 70/288 (24%) | ||
Grin3b | NP_579842.2 | PBP1_iGluR_NMDA_NR3 | 21..405 | CDD:107372 | 69/402 (17%) |
PBP2_iGluR_NMDA_Nr3 | 414..808 | CDD:270438 | 107/418 (26%) | ||
Lig_chan | 576..842 | CDD:278489 | 70/289 (24%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 882..910 | ||||
Involved in the trafficking and surface expression of NMDARs. /evidence=ECO:0000250 | 951..984 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166349737 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.930 |