DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIA and Grin3b

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:886 Identity:194/886 - (21%)
Similarity:321/886 - (36%) Gaps:227/886 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 PTNDSFLLQQITCELIS--NGVAAIFGPSSKAASDIVAQIANATGIPHIEYDLKLEATRQE---- 132
            ||.|...|.:..|::::  ..||:|..|.::....::..:|.||..|      .|...|:|    
Mouse   160 PTRDPASLARGLCQVLAPPGVVASITFPEARPELRLLQFLAAATETP------VLSVLRREVRAP 218

  Fly   133 ---QLNHQMSINVAPSLSVLSRAYFEIIKSNYEWRTFTLI---YETPEGLARL---------QDL 182
               .....:.::.|..|..:......:::: :.|....|:   ...|.||..|         :.:
Mouse   219 LGAPTPFHLQLDWASPLETILDVLVSLVRA-HAWEDIALVLCRVRDPSGLVTLWTSRASQAPKFV 282

  Fly   183 MNIQALNSDYVKLR-NLADYADDYRILWK-ETDETFHEQRIILDCEPKTLKELLKVSIDFKLQGP 245
            :::..|:|....|| .||       :|.. |...|.....::|.|......|:|:.:      .|
Mouse   283 LDLSQLDSGNDSLRATLA-------LLGTLEGGGTPVSAAVLLGCSTAHAHEVLEAA------PP 334

  Fly   246 FRNWFL-THLDTHNSGLRDIYNEDFKANITSVRLKVVDANPFERKKTRLTKVDQILG--NQTMLP 307
            ...|.| |.|.                         .:|.|    ||.|.....:||  .|..|.
Mouse   335 GPQWLLGTPLP-------------------------AEALP----KTGLPPGVLVLGETGQPSLE 370

  Fly   308 ILIYDAVVLFASSARNVIAAMQPFHPPNR------HC------GSSSP----------------- 343
            ..::|.|.|.|    ..:::|...||...      :|      ||.|.                 
Mouse   371 AAVHDMVELVA----RALSSMALMHPERALLPAAVNCEDLKTGGSESTARTLARFLSNTSFQGRT 431

  Fly   344 ---WMLGAFIVNEMKTISEDDVEPHFKTENMKLDEYGQRIHFNLEIYKPTVNEPMMVWTPDNGIK 405
               |:.|:         |:..|..|||..:::.|..|                 ...|......:
Mouse   432 GAVWVAGS---------SQVHVSRHFKVWSLRRDPLG-----------------APAWATVGSWQ 470

  Fly   406 KRLLN-------LELESAGTTQDFSEQRKVYTVVTHYEEPYFMMKEDHEN--------------- 448
            ...|:       |.:.|...||    .|....|||..|.|:...:|..|:               
Mouse   471 DGQLDFQPGAAALRVPSPSGTQ----ARPKLRVVTLVEHPFVFTRESDEDGQCPAGQLCLDPGTN 531

  Fly   449 --------FRGREKYE----------GYAVDLISKLSELMEFDYEFMIVNGNGKYNP-ETKQWDG 494
                    |...|...          ||.:||:.:|:|.:.||:|..|| |:|||.. ...:|.|
Mouse   532 DSARLDALFTALENGSVPRTLRRCCYGYCIDLLERLAEDLAFDFELYIV-GDGKYGALRDGRWTG 595

  Fly   495 IIRKLIDHHAQIGVCDLTITQMRRSVVDFTVPFMQLGISIL-HYKSPPEPKNQFAFLEPFAVEVW 558
            ::..|:...|.:.|...:|...|..|||||.||....:.|: ..:....|..  ||:.|....:|
Mouse   596 LVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRTRDTASPIG--AFMWPLHWSMW 658

  Fly   559 IYMIFAQLIMTLAFVFIARLSYREWLPP---NPAIQDPDELENIWNVNNSTWLMVGSIMQQGCDI 620
            : .:||.|.:|..|     |:..||..|   .|.           ..|..|.....|.:.....|
Mouse   659 V-GVFAALHLTALF-----LTLYEWRSPYGLTPR-----------GRNRGTVFSYSSALNLCYAI 706

  Fly   621 L---------PRGPHMRILTGMWWFFALMMLSTYTANLAAFLTSNKWQSSIKSLQDLIEQDKVHF 676
            |         |:.|..|.|..:|..|.|::||:|||||||.:..:|....:..:.|    .|:|.
Mouse   707 LFGRTVSSKTPKCPTGRFLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEELSGIHD----PKLHH 767

  Fly   677 GSMRGGSTSLFFSESNDTDYQRAWNQMKDFNPSAFTSTNKEGVARVRKEKGGY-AFLMETTSLTY 740
            .| :|......:..|.:...:.::.:|..........|...|||.:..:.... ||:|:.:.|.|
Mouse   768 PS-QGFRFGTVWESSAEAYIKASFPEMHAHMRRHSAPTTPHGVAMLTSDPPKLNAFIMDKSLLDY 831

  Fly   741 --NIERNCDLTQIGEQIGEKHYGLAVPLGSDYRTNLSVSILQLSERGELQKMKNKWWKNHNVTCD 803
              :|:.:|.|..:|:....:.||:.:|..|...:|||..|.:....|.:..:.:||:|  .|.|.
Mouse   832 EVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYK--MVPCG 894

  Fly   804 S--YHEVDGDELSIIELGGVFLVLAGGVLIGVILGIFEFLW 842
            .  :...:..::.:..|.|:|::|..|:...::..:.|.::
Mouse   895 KRVFAVTETLQMGVYHLSGLFVLLCLGLGSALLTSLGEHVF 935

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 72/387 (19%)
ANF_receptor 46..386 CDD:279440 71/369 (19%)
PBP2_iGluR_Kainate 426..796 CDD:270432 108/419 (26%)
Lig_chan 556..828 CDD:278489 71/288 (25%)
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600 73/399 (18%)
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 107/418 (26%)
Lig_chan 656..922 CDD:365843 71/289 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846268
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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