DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIA and gria3a

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_005165152.1 Gene:gria3a / 170452 ZFINID:ZDB-GENE-020125-5 Length:903 Species:Danio rerio


Alignment Length:843 Identity:260/843 - (30%)
Similarity:437/843 - (51%) Gaps:74/843 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YAFIIIIGFLEGIIALGGDDRNEITVGAIFYENEKEIELSFDQAFREVN-NMKFSELRFVTIKRY 72
            :|.::::.:|  ::.......|:|.:|.:|..:..:...:|..|.:..| |...:|..|..  .|
Zfish     6 HASVLLLPWL--VLQTQAGFPNQINIGGLFMRSTVQEHSAFRFAVQLYNTNQNITEKPFHL--NY 66

  Fly    73 ----MPTNDSFLLQQITCELISNGVAAIFGPSSKAASDIVAQIANATGIPHIEYDLKLEATRQEQ 133
                :.:::||.:....|...|.||.||||...:.:.:.:.....|.   |..:   :..:....
Zfish    67 NVDNLESSNSFSVTHAFCSQFSRGVYAIFGFYDRRSMNTLTSFCGAL---HTSF---ITPSFPTD 125

  Fly   134 LNHQMSINVAPSL--SVLSRAYFEIIKSNYEWRTFTLIYETPEGLARLQDLMNIQALNSDYVKLR 196
            .:.|..:.:.|||  ::||      :.::|:|..|..:|:|..|.:.||.:|....:|:..|..|
Zfish   126 TDVQFVLQMRPSLRGALLS------LLAHYKWEKFVYLYDTDRGFSILQAIMESAVMNNWQVTAR 184

  Fly   197 NLADYAD--DYRILWKETDETFHEQRIILDCEPKTLKELLKVSIDFKLQGPFRNWFLTHLDTHNS 259
            ::.:..|  :||.:.:|.|.. .|:|.::|||.:.:..:|:..:.........::.|.:|...|.
Zfish   185 SVGNIVDPLEYRRIIEEMDRR-QEKRFLIDCEVERINSILEQVVIAGKNSRGYHYILANLGFTNM 248

  Fly   260 GLRDIYNEDFKANITSVRLKVVDANPFERKKTRLTKVDQ-ILGNQTMLPI-----LIYDAVVLFA 318
            .|..:::..  ||||..::...|:...::...|..::|: ........|:     |.:||:::.|
Zfish   249 SLDKVFSGG--ANITGFQIINPDSPIVQQFLQRWERLDEREFPESRSSPLKYTSALTHDAILVIA 311

  Fly   319 SSARNVIAAMQPFHPPNRHCGSSS--------PWMLGAFIVNEMKTISEDDVEPHFKTENMKLDE 375
            .:.|.:  ..|......|  ||:.        ||..|..|...:|.:....:     |.|::.|.
Zfish   312 EAFRYL--RRQRVDISRR--GSAGDCLANPAVPWSQGIDIERALKMVQVQGM-----TGNIQFDS 367

  Fly   376 YGQRIHFNLEIY--KPTVNEPMMVWTPDNGIKKRLLNLELESAGTTQDFSEQRKVYTVVTHYEEP 438
            :|:|.::.:::|  ||.....:..|   |..:|.:..:|.:.  |.:..|.:.:...|.|..|.|
Zfish   368 FGRRSNYTVDVYEMKPGGARKIGYW---NEFEKFVYIVEQQV--TNESSSVENRTIVVTTIMEAP 427

  Fly   439 YFMMKEDHENFRGREKYEGYAVDLISKLSELMEFDYEFMIVNGNGKY---NPETKQWDGIIRKLI 500
            |.|.|.::....|.::||||.|||.|::::.:...|:..|| .:|||   :||||.|:|::.:|:
Zfish   428 YVMYKRNYMQLEGNDRYEGYCVDLASEIAKHVGIKYKLSIV-ADGKYGARDPETKTWNGMVGELV 491

  Fly   501 DHHAQIGVCDLTITQMRRSVVDFTVPFMQLGISILHYKSPPEPKNQFAFLEPFAVEVWIYMIFAQ 565
            ...|.|.|..||||.:|..|:||:.|||.|||||:..|........|:||:|.|.|:|:.::||.
Zfish   492 YGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAY 556

  Fly   566 LIMTLAFVFIARLSYREW-LPPNPAIQDPD---ELENIWNVNNSTWLMVGSIMQQGCDILPRGPH 626
            :.:::....::|.|..|| |..|...:||.   :..|.:.:.||.|..:|:.|||||||.||...
Zfish   557 IGVSVVLFLVSRFSPYEWHLDDNEETKDPQTPPDPPNDFGIFNSLWFSLGAFMQQGCDISPRSLS 621

  Fly   627 MRILTGMWWFFALMMLSTYTANLAAFLTSNKWQSSIKSLQDLIEQDKVHFGSMRGGSTSLFFSES 691
            .||:.|:||||.|:::|:||||||||||..:..|.|:|.:||.:|.::.:|::..|||..||..|
Zfish   622 GRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRS 686

  Fly   692 NDTDYQRAWNQMKDFNPSAFTSTNKEGVARVRKEKGGYAFLMETTSLTYNIERN-CDLTQIGEQI 755
            ....|::.|:.||...||.|..|..:|||||||.||.:|||:|:|...|..:|. ||..::|..:
Zfish   687 KIAVYEKMWSYMKSAEPSVFVKTTPDGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNL 751

  Fly   756 GEKHYGLAVPLGSDYRTNLSVSILQLSERGELQKMKNKWW--KNHNVTCDSYHEVDGDELSII 816
            ..|.||:|.|.||..||.:::::|:|||:|.|.|:|||||  |....|.||     |.::|::
Zfish   752 DSKGYGVATPKGSALRTPVNLAVLKLSEQGILDKLKNKWWYDKGECGTKDS-----GSKVSLL 809

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 86/395 (22%)
ANF_receptor 46..386 CDD:279440 79/362 (22%)
PBP2_iGluR_Kainate 426..796 CDD:270432 160/379 (42%)
Lig_chan 556..828 CDD:278489 112/268 (42%)
gria3aXP_005165152.1 PBP1_iGluR_AMPA_GluR3 28..399 CDD:107382 87/399 (22%)
ANF_receptor 39..382 CDD:279440 80/368 (22%)
PBP2_iGluR_AMPA 415..797 CDD:270433 161/382 (42%)
Lig_chan 547..810 CDD:278489 112/268 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591097
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.740

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