DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIA and Gria4

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_006509904.1 Gene:Gria4 / 14802 MGIID:95811 Length:912 Species:Mus musculus


Alignment Length:940 Identity:296/940 - (31%)
Similarity:472/940 - (50%) Gaps:99/940 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LCPVVIYAFIIIIGFLEGIIALGGDDRNEITVGAIFYENEKEIELSFDQA-FREVNNMKFSELRF 66
            :|..::..|....|...|...      :.:.:|.:|..|..:...:|..| |....:...||..|
Mouse     4 ICRQIVLLFSGFWGLAMGAFP------SSVQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPF 62

  Fly    67 VTIKRY--MPTNDSFLLQQITCELISNGVAAIFGPSSKAASDIVAQIANATGIPHIEYDLKLEAT 129
            ..:...  :.|.:||.:....|...|.||.||||...|.:...:....:|..|..|......|. 
Mouse    63 NLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEG- 126

  Fly   130 RQEQLNHQMSINVAPSL--SVLSRAYFEIIKSNYEWRTFTLIYETPEGLARLQDLMNIQALNSDY 192
                 ..|..:.:.|||  ::||      :..:|||..|..:|:|..|.:.||.:|.....|..:
Mouse   127 -----ESQFVLQLRPSLRGALLS------LLDHYEWNCFVFLYDTDRGYSILQAIMEKAGQNGWH 180

  Fly   193 VKLRNLADYAD-DYRILWKETDETFHEQRIILDCEPKTLKELLK--VSIDFKLQGPFRNWFLTHL 254
            |....:.::.| .||.|.:|.|.. .|::.::|||.:.|:.:|:  ||:...::|       .|.
Mouse   181 VSAICVENFNDVSYRQLLEELDRR-QEKKFVIDCEIERLQNILEQIVSVGKHVKG-------YHY 237

  Fly   255 DTHNSGLRDIYNEDF---KANITSVRLKVVDAN-PFERK-KTRLTKVDQ--ILGNQT---MLPIL 309
            ...|.|.:||..|.|   .||:|..:|  ||.| |...| ..|..|:||  ..|::|   ....|
Mouse   238 IIANLGFKDISLERFIHGGANVTGFQL--VDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSAL 300

  Fly   310 IYDAVVLFASSARNV----IAAMQPFHPPNRHCGSSSPWMLGAFIVNEMKTISEDDVEPHFKTEN 370
            .||.|::.|.:.|::    |...:..:..:.....::||..|..:...:|.:....:     |.|
Mouse   301 TYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGL-----TGN 360

  Fly   371 MKLDEYGQRIHFNLEIYKPTVNEPMMV--WTPDNGIKKRLLNLELESAGTTQDFSEQRKVYTVVT 433
            ::.|.||:|:::.:::::.....|..|  |   |.:.|.:|..:..:.|......|.|.| .|.|
Mouse   361 VQFDHYGRRVNYTMDVFELKSTGPRKVGYW---NDMDKLVLIQDAPTLGNDTAAIENRTV-VVTT 421

  Fly   434 HYEEPYFMMKEDHENFRGREKYEGYAVDLISKLSELMEFDYEFMIVNGNGKY---NPETKQWDGI 495
            ..|.||.|.|::||.|.|.:|||||.|||.|::::.:...|:..|| .:|||   :.:||.|:|:
Mouse   422 IMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIV-PDGKYGARDADTKIWNGM 485

  Fly   496 IRKLIDHHAQIGVCDLTITQMRRSVVDFTVPFMQLGISILHYKSPPEPKNQFAFLEPFAVEVWIY 560
            :.:|:...|:|.:..||||.:|..|:||:.|||.|||||:..|........|:||:|.|.|:|:.
Mouse   486 VGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMC 550

  Fly   561 MIFAQLIMTLAFVFIARLSYREWLPPNPAIQD-----PDELENIWNVNNSTWLMVGSIMQQGCDI 620
            ::||.:.:::....::|.|..||....|  :|     .|:..|.:.:.||.|..:|:.|||||||
Mouse   551 IVFAYIGVSVVLFLVSRFSPYEWHTEEP--EDGKEGPSDQPPNEFGIFNSLWFSLGAFMQQGCDI 613

  Fly   621 LPRGPHMRILTGMWWFFALMMLSTYTANLAAFLTSNKWQSSIKSLQDLIEQDKVHFGSMRGGSTS 685
            .||....||:.|:||||.|:::|:||||||||||..:..|.|:|.:||.:|.::.:|::..|||.
Mouse   614 SPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTK 678

  Fly   686 LFFSESNDTDYQRAWNQMKDFNPSAFTSTNKEGVARVRKEKGGYAFLMETTSLTYNIERN-CDLT 749
            .||..|....|::.|..|:...||.||.|..||||||||.||.:|||:|:|...|..:|. ||..
Mouse   679 EFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTM 743

  Fly   750 QIGEQIGEKHYGLAVPLGSDYRTNLSVSILQLSERGELQKMKNKWWKNHNVTC---DSYHEVDGD 811
            ::|..:..|.||:|.|.||..||.:::::|:|||.|.|.|:|||||.:.. .|   ||..:....
Mouse   744 KVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKG-ECGPKDSGSKDKTS 807

  Fly   812 ELSIIELGGVFLVLAGGVLIGVILGIFEFLWNVQNVAVEERVTPWQAFKAELIFALKFWVRKKPM 876
            .||:..:.|||.:|.||:.:.:::.:.||.:.               .:||   |.:..|.|...
Mouse   808 ALSLSNVAGVFYILVGGLGLAMLVALIEFCYK---------------SRAE---AKRMKVAKSAQ 854

  Fly   877 RISSSSDKS----SSRRSSGSRRSSKEKSR 902
            ..:.:|.::    ::.|.:...||.|::|:
Mouse   855 TFNPTSSQNTHNLATYREADFFRSHKKQSQ 884

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 101/394 (26%)
ANF_receptor 46..386 CDD:279440 94/361 (26%)
PBP2_iGluR_Kainate 426..796 CDD:270432 162/378 (43%)
Lig_chan 556..828 CDD:278489 115/280 (41%)
Gria4XP_006509904.1 PBP1_iGluR_AMPA_GluR4 28..400 CDD:380611 103/401 (26%)
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 163/385 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846260
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.740

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