DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIA and grik5

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_002936446.1 Gene:grik5 / 100497490 XenbaseID:XB-GENE-953974 Length:995 Species:Xenopus tropicalis


Alignment Length:889 Identity:271/889 - (30%)
Similarity:442/889 - (49%) Gaps:81/889 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 IALGGDDRNEITVGAIFYENEKEI-ELSFDQAFREVNNMKFSELRFVTIKRYMPTNDSFLLQQIT 85
            :||..:..|..|.|:.....|.|| ||..|..:...:.|                          
 Frog    48 LALAREHINSHTQGSASGRVEVEIFELQKDSQYETTDTM-------------------------- 86

  Fly    86 CELISNGVAAIFGPS-SKAASDIVAQIANATGIPHIEYDLKLEATRQEQLNHQMSINVAPSLSVL 149
            |:::..||.::.||| |.|::..|:.|.....||||:...: ||.:.:.|.. .|:::.||...:
 Frog    87 CQILPKGVVSVLGPSTSPASASTVSHICGEKEIPHIKVGPE-EAPKLQYLRF-ASVSLYPSNEDI 149

  Fly   150 SRAYFEIIKSNYEWRTFTLIYETPEGLARLQDLMNIQALNSDYVKLRNLADYADDYRILWKETDE 214
            |.|...|:||.:...| :||....|.|.||::|:....::.|.:.:|.|.:..|...:|.:..|:
 Frog   150 SLAVSHILKSFHNPST-SLICAKAECLLRLEELVRQFLISKDTLSVRMLDESNDPTPLLKEIRDD 213

  Fly   215 TFHEQRIILDCEPKTLKELLKVSIDFKLQGPFRNWFLTHLDTHNSGLRDIYNEDFKANITSVRLK 279
            ..  ..||:|........:||.:.:..:......:.||.:|.....|..|.::  ::||....: 
 Frog   214 KV--STIIIDANATVSHLILKKASELGMTSAHYKYILTTMDFPLLSLEGIVSD--QSNILGFSM- 273

  Fly   280 VVDANPFERKKTRL--------TKVDQILGNQTMLPILIYDAVVLFASSARNVIAAMQPFHPPNR 336
            ...::||..:..|.        .::...|| ..:...|::|||.:..|:.|. :...|.......
 Frog   274 YNSSHPFYLEFLRSLNMSWRENCELSTYLG-PALSAALMFDAVHVVVSAVRE-LNRSQEIGVKQL 336

  Fly   337 HCGSSSPWMLGAFIVNEMKTISEDDVEPHFKTENMKLDEYGQRIHFNLEIYKPT--VNEPMMVWT 399
            .|.:|..|..|..::|.::.:..|.:     |..::.:..|||.::.|.|.:..  .:..:.||.
 Frog   337 SCSTSQIWQHGTSLMNYLRMVEYDGL-----TGRVEFNSKGQRTNYTLRILEKAGDGHREIGVWY 396

  Fly   400 PDNGIKKRLLNLELESAGTTQDFSEQRKVYTVVTHYEEPYFMMKEDHENFRGREKYEGYAVDLIS 464
            .:..:.....:|:|.::.|.::     |...|.|..|.||.|.|.::.:..|.::|||:..:::.
 Frog   397 SNRTLAMNATSLDLSTSETLEN-----KTLVVTTILENPYMMRKSNYRSLSGNDQYEGFCAEMLM 456

  Fly   465 KLSELMEFDYEFMIVNGNGKYN-PETK-QWDGIIRKLIDHHAQIGVCDLTITQMRRSVVDFTVPF 527
            :|:.|:.|:|:..:|. :|.|. ||.. .|.|::.:||:..|.:.|...|||..|..|:||:.||
 Frog   457 ELAALLRFNYKIKLVE-DGLYGAPEPNGSWTGMVGELINRKADLAVAAFTITAEREKVIDFSKPF 520

  Fly   528 MQLGISILHYKSPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLAFVFIARLSYREWLPPNPAIQD 592
            |.||||||:..........|:||:||:..||::|:.|.|.::......||||..||..|:|.:::
 Frog   521 MTLGISILYRVQMGRKPGYFSFLDPFSPAVWLFMLLAYLAVSCVLFLAARLSPYEWYNPHPCLRE 585

  Fly   593 PDE-LENIWNVNNSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFALMMLSTYTANLAAFLTSN 656
            ... |||.:.:.||.|..||..||||.:::||....|.::|:||.|.|:::|:||||||||||..
 Frog   586 RHHILENQYTLGNSLWFPVGGFMQQGSEVMPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQ 650

  Fly   657 KWQSSIKSLQDLIEQDKVHFGSMRGGSTSLFFSESNDTDYQRAWNQMKDFNPSAFTSTNKEGVAR 721
            :.:..|:|..||.:|..:.:|::.||||..||..|....|||.||.|....||.|..:.:||:||
 Frog   651 RMEVPIESADDLADQTNIEYGTIHGGSTMTFFQNSRYQTYQRMWNYMNSKQPSVFVKSTEEGIAR 715

  Fly   722 VRKEKGGYAFLMETTSLTYNIERNCDLTQIGEQIGEKHYGLAVPLGSDYRTNLSVSILQLSERGE 786
            |...:  ||||:|:|...|:...||:|||||..:..|.||:.:||||.||..::::||||.|...
 Frog   716 VLNSR--YAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPYRDEITLAILQLQENNR 778

  Fly   787 LQKMKNKWWKNHNVTCDSYHEVDGDELSIIELGGVFLVLAGGVLIGVILGIFEFLWNVQNVAVEE 851
            |:.:|.|||:......:..|...|  |.:..:||:|:||..|::|.|.:.|.||:|:.:.....|
 Frog   779 LEILKRKWWEGGKCPKEEDHRAKG--LGMENIGGIFVVLICGLIIAVFVAIMEFVWSTRRSVDNE 841

  Fly   852 RVTPWQAFKAELIFALKFWVRKKPMRISSSSDKSSSRRSSGSRR 895
            .::..|...:||             |.:.|..|:|  ||...||
 Frog   842 EISVCQEMLSEL-------------RSAVSCKKTS--RSRHRRR 870

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 86/382 (23%)
ANF_receptor 46..386 CDD:279440 78/348 (22%)
PBP2_iGluR_Kainate 426..796 CDD:270432 151/372 (41%)
Lig_chan 556..828 CDD:278489 112/272 (41%)
grik5XP_002936446.1 PBP1_iGluR_Kainate_KA1_2 27..405 CDD:380616 89/397 (22%)
Periplasmic_Binding_Protein_Type_2 418..788 CDD:389745 151/377 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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