DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIA and grik2

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_017949808.1 Gene:grik2 / 100495093 XenbaseID:XB-GENE-5902331 Length:913 Species:Xenopus tropicalis


Alignment Length:925 Identity:303/925 - (32%)
Similarity:474/925 - (51%) Gaps:117/925 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 CPVVIYAFIIIIGFLEG---IIALGGDDRNEITVGAIFYENEK----EIELSFDQAFREVNN--- 58
            |.:...|.::.||:.:|   ::..||          ||...|.    ..||:|..|...:|.   
 Frog    20 CTLRFVACMVWIGYTQGTTHVLRFGG----------IFEYVESGPFGAEELAFRFAVNTINRNRT 74

  Fly    59 -MKFSELRFVT--IKRYMPTNDSFLLQQITCELISNGVAAIFGPSSKAASDIVAQIANATGIPHI 120
             :..:.|.:.|  |..|    |||...:..||.:|.|||||||||..::::.|..|.||.|:|||
 Frog    75 LLPNTTLTYDTQRINLY----DSFEASRKACEQLSLGVAAIFGPSHSSSANAVQSICNALGVPHI 135

  Fly   121 EYDLKLEATRQEQLNHQMS-------INVAPSLSVLSRAYFEIIKSNYEWRTFTLIYETPEGLAR 178
                      |.:..||:|       :::.|..|.||||..::::. ::|:|.|:.|:...||.|
 Frog   136 ----------QTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQF-FKWKTVTIAYDDSTGLIR 189

  Fly   179 LQDLMNIQALNSDYVKLRNLADYADDYRILWKE--TDETFHEQRIILDCEPKTLKELLKVSIDFK 241
            ||:|:...:..:..:|:|.|.....|.:.|.||  ..:.||   :|.||.......:||.::...
 Frog   190 LQELIKAPSRYNLRLKIRQLPIDTKDAKPLLKEMKRGKEFH---VIFDCSHDMAAGILKQALAMG 251

  Fly   242 LQGPFRNWFLTHLDTHNSGLRDIYNEDFK---ANITSVR---------LKVVDANPFERKKTRLT 294
            :...:.::..|.||     |..:..|.::   .|:|..|         |.:::....||.:.. .
 Frog   252 MMTEYYHYIFTTLD-----LFALDVEPYRYSGVNMTGFRILNIENSQVLSIIEKWSMERLQAP-P 310

  Fly   295 KVDQIL--GNQTMLPILIYDAVVLFASSARNVIAAMQPFHP---PNRHCGSSSPWMLGAFIVNEM 354
            |.|..|  |..|....|:||||.:       |..|:|.|..   .:..|....||..||..::.:
 Frog   311 KPDSGLLDGFMTTDAALMYDAVHV-------VSVAVQQFPQMTVSSLQCNRHKPWRFGARFISLI 368

  Fly   355 KTISEDDVEPHF----------KTENMKLDEYGQRIHFNLEI--YKPTVNEPMMVWTPDNGIKKR 407
            |       |.|:          ||..::.|       |:|::  .|....|.:..|.|.:|: ..
 Frog   369 K-------EAHWEGLTGRITFNKTNGLRTD-------FDLDVISLKEEGLEKIGTWDPTSGL-NM 418

  Fly   408 LLNLELESAGTTQDFSEQRKVYTVVTHYEEPYFMMKEDHENFRGREKYEGYAVDLISKLSELMEF 472
            ..|.:.:.|..|...|.:..:.|.:  .||||.|.|:..:...|:.::|||.:||:.|||:::.|
 Frog   419 TENQKGKPANITDSLSNRSLIVTTI--LEEPYVMFKKSDKPLYGKARFEGYCIDLLEKLSKILGF 481

  Fly   473 DYEFMIVNGNGKYNPE---TKQWDGIIRKLIDHHAQIGVCDLTITQMRRSVVDFTVPFMQLGISI 534
            :||..:|. :|||..:   |:||:|::|:|:||.|.:.|..|.||.:|..|:|||.|||.|||||
 Frog   482 EYEVRLVE-DGKYGAKDDTTQQWNGMVRELMDHKADLAVAPLAITYVREQVIDFTKPFMTLGISI 545

  Fly   535 LHYKSPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLAFVFIARLSYREWLPPNPAIQDPDELENI 599
            |:.|........|:||.|.:.::|:|::.|.|.::.....|||.|..||..|:|...|.|.:||.
 Frog   546 LYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENN 610

  Fly   600 WNVNNSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFALMMLSTYTANLAAFLTSNKWQSSIKS 664
            :.:.||.|..||::||||.:::|:....||:.|:||||.|:::|:||||||||||..:.:|.|.|
 Frog   611 FTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDS 675

  Fly   665 LQDLIEQDKVHFGSMRGGSTSLFFSESNDTDYQRAWNQMKDFNPSAFTSTNKEGVARVRKEKGGY 729
            ..||.:|.|:.:|:::.|:|..||.:|....|::.|..|...:.|.....|:||:.||.  ...|
 Frog   676 ADDLAKQTKIEYGAVQDGATMTFFKKSRIPTYEKMWAFMNSRSQSVLVKNNEEGIQRVL--TSDY 738

  Fly   730 AFLMETTSLTYNIERNCDLTQIGEQIGEKHYGLAVPLGSDYRTNLSVSILQLSERGELQKMKNKW 794
            |||||:|::.:..:|||:|||||..|..|.||:..|:||.||..::::||||.|.|.|..||.||
 Frog   739 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGVLHMMKEKW 803

  Fly   795 WKNHNVTCDSYHEVDGDELSIIELGGVFLVLAGGVLIGVILGIFEFLWNVQNVAVEERVTPWQAF 859
            |:.:.  |......:...|.:..:||:|:|||.|:::.|.:.:.|||:..:..|..|:.:...|.
 Frog   804 WRGNG--CPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAM 866

  Fly   860 KAELIFALKFWVRKK 874
            ..||..:||...|.|
 Frog   867 VEELRMSLKCQRRLK 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 111/418 (27%)
ANF_receptor 46..386 CDD:279440 104/381 (27%)
PBP2_iGluR_Kainate 426..796 CDD:270432 157/372 (42%)
Lig_chan 556..828 CDD:278489 111/271 (41%)
grik2XP_017949808.1 PBP1_iGluR_Kainate 42..419 CDD:380605 114/432 (26%)
Periplasmic_Binding_Protein_Type_2 435..805 CDD:419667 157/374 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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