DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Vim

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_112402.1 Gene:Vim / 81818 RGDID:621646 Length:466 Species:Rattus norvegicus


Alignment Length:505 Identity:136/505 - (26%)
Similarity:238/505 - (47%) Gaps:99/505 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SSKSRR----AGTATPQPGN----TSTPRPPSAGPQPPPPSTHSQTASSP--------------- 43
            ||..||    :||::....|    |::.|..|.|....|.::.|..:|||               
  Rat     8 SSSYRRMFGGSGTSSRPSSNRSYVTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRS 72

  Fly    44 --------------------LSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQT 88
                                .:..:::|..||||||.||||.|.|||:||.||.:|..|..|::.
  Rat    73 SMPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 137

  Fly    89 TRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTA 153
            .:.   :..:.:.:::|.|:.|.||.:|....|:||.|::...|.|                   
  Rat   138 LKG---QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE------------------- 180

  Fly   154 EGNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLEN 218
                                   |..:|.|.|.|.:.:.|......:..|::::..:|:|:|||.
  Rat   181 -----------------------DIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLER 222

  Fly   219 TIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINR 283
            .::||:||::|..::|.:||.|.:...|.::.:||..:|.   ..|..:|:::|.|||.....|.
  Rat   223 KVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSK---PDLTAALRDVRQQYESVAAKNL 284

  Fly   284 DEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLER 348
            .|.:..|:.|...|.|||.|.:::..::.:|....|.::.:|...::.|:..|..|..::|::|.
  Rat   285 QEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEE 349

  Fly   349 QLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNIT 413
            ....:...:...|..|:.|:..::|||.:.|:|||||:::|::||:|||.|.|||.|||:|::: 
  Rat   350 NFALEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISL- 413

  Fly   414 PATNTATVQSFSQSLRNSTRA-TPSRRTPSAAVK----RKRAVVDESEDH 458
            |..|.:::.....:|.:.... |.|:||  ..:|    |...|::|:..|
  Rat   414 PLPNFSSLNLRETNLESLPLVDTHSKRT--LLIKTVETRDGQVINETSQH 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 106/354 (30%)
LTD 467..572 CDD:460003
VimNP_112402.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33 7/24 (29%)
Head 2..95 16/86 (19%)
Filament_head 14..101 CDD:461414 12/86 (14%)
Coil 1A 96..131 20/34 (59%)
Filament 102..410 CDD:459643 106/355 (30%)
Linker 1 132..153 2/23 (9%)
Coil 1B 154..245 30/132 (23%)
Linker 12 246..268 5/24 (21%)
Coil 2 269..407 44/137 (32%)
[IL]-x-C-x-x-[DE] motif. /evidence=ECO:0000250|UniProtKB:P08670 326..329 1/2 (50%)
Tail 408..466 14/57 (25%)
Blue background indicates that the domain is not in the aligned region.

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