DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Lmntd1

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:XP_006507048.1 Gene:Lmntd1 / 74071 MGIID:1921321 Length:438 Species:Mus musculus


Alignment Length:207 Identity:55/207 - (26%)
Similarity:93/207 - (44%) Gaps:47/207 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   412 ITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVA-----------DYYV 465
            ||...|::|:.|..|....||..:.|.:..|...:...::|...:..|.:           ||::
Mouse   101 ITSTQNSSTLSSRGQLASKSTILSCSHKDSSLGKQSTSSMVPRRQPQSSSDVDTYTFGNGEDYFL 165

  Fly   466 S---------------------------------ASAKGNVEIKEIDPEGKFVRLFNKGSE-EVA 496
            |                                 :|:.|.::|.|::.:|.||||.|..:| ||.
Mouse   166 SLFGESKKLTAHTPQAENVSEHLSVILEEVGQFTSSSLGEIKIAEVNIKGLFVRLVNSSNEKEVE 230

  Fly   497 IGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQ-KWVSADNTR 560
            ||...||:.:|....| .|:|..::.::.|..:|||:|.::|..:||:..|.:.| |:.|:.:..
Mouse   231 IGNHILQQNVNGHAVS-LYQFPDNITLQANSTVTVWAAASEAKPQPPTDFVWEEQSKFRSSPDCT 294

  Fly   561 TILLNSEGEAVA 572
            |||....|||:|
Mouse   295 TILCKPNGEAIA 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643
LTD 467..572 CDD:460003 39/106 (37%)
Lmntd1XP_006507048.1 LTD 200..309 CDD:460003 40/108 (37%)
Blue background indicates that the domain is not in the aligned region.

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