DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Lmntd2

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001334494.1 Gene:Lmntd2 / 72000 MGIID:1919250 Length:674 Species:Mus musculus


Alignment Length:651 Identity:132/651 - (20%)
Similarity:233/651 - (35%) Gaps:176/651 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 PSTHSQTASSPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRET 97
            |.:..::....:||   :....:.:..:|...:.|.:|||....:::::|.        |.|...
Mouse     3 PKSCQESEDKQVSP---APAGVQPDSSDLGSPVGTPVDRVAPSYSQSAKLY--------TSTPMG 56

  Fly    98 TNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYES 162
            .::|.....|.|:.|.|               :.|||:.|     |:.:........|:...|.|
Mouse    57 CSVKQQLAPETLDPRTL---------------RLLWEQRE-----LEIQALRWAVQNGHNARYSS 101

  Fly   163 RANELNNKYNQANADRKKLNEDLNEALKELERLRKQF-EETRKNLEQETLSRVDLENTIQSLREE 226
            ...|:                    |....||||... ..||.:..|:..    |.|.:|.|..|
Mouse   102 ILQEV--------------------AGVPSERLRGMIAPPTRNSKSQDKF----LRNQVQKLTLE 142

  Fly   227 LSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSL---QELRAQYEEQMQINRDEIQS 288
            |..:.:...||       ||            :.:.||:|:|   |:|.|           |:|:
Mouse   143 LKAQKEQAQQE-------KQ------------QLEEKLQQNLWAKQQLEA-----------ELQT 177

  Fly   289 LYEDKIQRLQEAA--ARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLD 351
            ..:..:.:|..::  .|...|...|:|.: :|.|..|..:.:    |.|....:.....||   |
Mouse   178 FQKSCLLQLARSSWVGRVLRSQTGSVEVV-TTEVLRDPSDFS----ESAEIPTSGEGFPLE---D 234

  Fly   352 NDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAY-----DKLLVGEEARLN 411
            .|.....|....|...|     ......|:.|.......:||.|.|..     .|:|  |.:.|.
Mouse   235 VDWNSIAQRYPNLFSNL-----NFYSDQKQSQPPTSETYTLDSEGATKHTEKPTKIL--EWSALP 292

  Fly   412 ITPATNTATVQSFSQS----LRNSTRAT---PSRRTPSAAVKR----KRAVVDESED----HS-- 459
            :...:::...||.:.|    |.:..:.|   ||:.|..|:.::    .|:....:||    ||  
Mouse   293 LLDTSSSERTQSDTSSCPIALHSGAKKTTGHPSQGTNLASSEQMQEHTRSFSGYTEDLCKSHSPS 357

  Fly   460 ----VADYYVSASAKGN----------VEIKEIDPEGKFVRLFNKG-SEEVAIGGWQLQRLINEK 509
                |.:.|........          ::|..:....||:|:.|:. :|.:.:||:.||:|:.: 
Mouse   358 CSKTVLESYTDLHHPYTRPQLNPFGCCLKIAAVSHREKFIRVINQSQAETIDLGGFVLQQLVRD- 421

  Fly   510 GPSTTYKFHRSVRIEPNGVITVWSADT-KASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVAN 573
            .|...|:|.....:.|...||||...| :...:.|.:......::.|:....|:|:|.:|:    
Mouse   422 FPVCMYRFPPGTLLAPQHHITVWGEGTSRTKKQLPVASGQDPFQFQSSRGCVTVLVNPQGQ---- 482

  Fly   574 LDRIKRIVSQH------TSSSRLSRRRSVTAVD-------------GNEQLYHQQGDPQQSNEKC 619
                  ::|:|      |..|::....:..::|             |.:|.  :...||:...|.
Mouse   483 ------VLSEHQATPCVTLGSKIFTDNTDWSIDCFPLSESEPDVHPGEQQC--RPSSPQKGRAKD 539

  Fly   620 A 620
            |
Mouse   540 A 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 75/365 (21%)
LTD 467..572 CDD:460003 26/116 (22%)
Lmntd2NP_001334494.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..40 7/39 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 255..282 6/26 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 296..339 9/42 (21%)
LTD 395..487 CDD:460003 26/102 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 514..573 6/29 (21%)

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