DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Lmntd2

DIOPT Version :9

Sequence 1:NP_001245892.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001334494.1 Gene:Lmntd2 / 72000 MGIID:1919250 Length:674 Species:Mus musculus


Alignment Length:651 Identity:132/651 - (20%)
Similarity:233/651 - (35%) Gaps:176/651 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 PSTHSQTASSPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRET 97
            |.:..::....:||   :....:.:..:|...:.|.:|||....:::::|.        |.|...
Mouse     3 PKSCQESEDKQVSP---APAGVQPDSSDLGSPVGTPVDRVAPSYSQSAKLY--------TSTPMG 56

  Fly    98 TNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYES 162
            .::|.....|.|:.|.|               :.|||:.|     |:.:........|:...|.|
Mouse    57 CSVKQQLAPETLDPRTL---------------RLLWEQRE-----LEIQALRWAVQNGHNARYSS 101

  Fly   163 RANELNNKYNQANADRKKLNEDLNEALKELERLRKQF-EETRKNLEQETLSRVDLENTIQSLREE 226
            ...|:                    |....||||... ..||.:..|:..    |.|.:|.|..|
Mouse   102 ILQEV--------------------AGVPSERLRGMIAPPTRNSKSQDKF----LRNQVQKLTLE 142

  Fly   227 LSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSL---QELRAQYEEQMQINRDEIQS 288
            |..:.:...||       ||            :.:.||:|:|   |:|.|           |:|:
Mouse   143 LKAQKEQAQQE-------KQ------------QLEEKLQQNLWAKQQLEA-----------ELQT 177

  Fly   289 LYEDKIQRLQEAA--ARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLD 351
            ..:..:.:|..::  .|...|...|:|.: :|.|..|..:.:    |.|....:.....||   |
Mouse   178 FQKSCLLQLARSSWVGRVLRSQTGSVEVV-TTEVLRDPSDFS----ESAEIPTSGEGFPLE---D 234

  Fly   352 NDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAY-----DKLLVGEEARLN 411
            .|.....|....|...|     ......|:.|.......:||.|.|..     .|:|  |.:.|.
Mouse   235 VDWNSIAQRYPNLFSNL-----NFYSDQKQSQPPTSETYTLDSEGATKHTEKPTKIL--EWSALP 292

  Fly   412 ITPATNTATVQSFSQS----LRNSTRAT---PSRRTPSAAVKR----KRAVVDESED----HS-- 459
            :...:::...||.:.|    |.:..:.|   ||:.|..|:.::    .|:....:||    ||  
Mouse   293 LLDTSSSERTQSDTSSCPIALHSGAKKTTGHPSQGTNLASSEQMQEHTRSFSGYTEDLCKSHSPS 357

  Fly   460 ----VADYYVSASAKGN----------VEIKEIDPEGKFVRLFNKG-SEEVAIGGWQLQRLINEK 509
                |.:.|........          ::|..:....||:|:.|:. :|.:.:||:.||:|:.: 
Mouse   358 CSKTVLESYTDLHHPYTRPQLNPFGCCLKIAAVSHREKFIRVINQSQAETIDLGGFVLQQLVRD- 421

  Fly   510 GPSTTYKFHRSVRIEPNGVITVWSADT-KASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVAN 573
            .|...|:|.....:.|...||||...| :...:.|.:......::.|:....|:|:|.:|:    
Mouse   422 FPVCMYRFPPGTLLAPQHHITVWGEGTSRTKKQLPVASGQDPFQFQSSRGCVTVLVNPQGQ---- 482

  Fly   574 LDRIKRIVSQH------TSSSRLSRRRSVTAVD-------------GNEQLYHQQGDPQQSNEKC 619
                  ::|:|      |..|::....:..::|             |.:|.  :...||:...|.
Mouse   483 ------VLSEHQATPCVTLGSKIFTDNTDWSIDCFPLSESEPDVHPGEQQC--RPSSPQKGRAKD 539

  Fly   620 A 620
            |
Mouse   540 A 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_001245892.1 Filament 54..409 CDD:278467 75/365 (21%)
Ax_dynein_light <283..377 CDD:287215 19/95 (20%)
LTD 466..572 CDD:279300 26/117 (22%)
Lmntd2NP_001334494.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..40 7/39 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 255..282 6/26 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 296..339 9/42 (21%)
LTD 395..487 CDD:395746 26/102 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 514..573 6/29 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0977
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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