DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Krt42

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_997648.2 Gene:Krt42 / 68239 MGIID:1915489 Length:452 Species:Mus musculus


Alignment Length:423 Identity:123/423 - (29%)
Similarity:191/423 - (45%) Gaps:90/423 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 AEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDD 117
            :||..:||||||||||:||||.||..|:.|.:::                         |.....
Mouse    93 SEKETMQNLNDRLATYLDRVRALEEANADLEVKI-------------------------REWYKK 132

  Fly   118 TARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLN 182
            .....||   |....::..|:|:||:...|.:..:....:......|::...||......|..:.
Mouse   133 QGPGPAR---DYSPYFKTIEDLRNKILAATIDNASIVLQIDNARLAADDFRTKYETELNLRMSVE 194

  Fly   183 EDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQT 247
            .|:|              ..|:.|::.||:|.|||..|:||:|||::..:.|.:|:|..|     
Mouse   195 ADIN--------------GLRRVLDELTLARADLEMQIESLKEELAYLRKNHEEEMNALR----- 240

  Fly   248 EYSEIDGRLSSEYDA----KLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRL-QEAAARTSNS 307
              .::.|.::.|.||    .|.:.|.|:|.|||:..:.||.:.:..:..|.:.| :|.|..|   
Mouse   241 --GQVGGDVNVEMDAAPGVDLSRILNEMRDQYEKMAEKNRKDAEEWFFTKTEELNREVATNT--- 300

  Fly   308 THKSIEELRSTRVRIDALNANINELE---QANADLNARIRDLERQLDNDRERHGQE-------ID 362
                 |.|:|:|..|..|..::..||   |:...:.|   .||..|.....|:|.:       |.
Mouse   301 -----EALQSSRTEITELRRSVQNLEIELQSQLSMKA---SLENSLAETEARYGAQLAQLQGLIS 357

  Fly   363 LLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQS 427
            .:|::|..||.:|.:|..|||.|:|:|..|:.|||.|.:||.||:|.|        ||  .:|.|
Mouse   358 SVEQQLCELRCDMERQNHEYQVLLDVKTRLEQEIATYRRLLEGEDAHL--------AT--QYSSS 412

  Fly   428 LRNSTRATPSRRTPSAAVKRKRAVVDESEDHSV 460
            |.:.    |||. .....::.|.:|:|.:|..|
Mouse   413 LASQ----PSRE-GMVTSRQVRTIVEEVQDGKV 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 108/369 (29%)
LTD 467..572 CDD:460003
Krt42NP_997648.2 Head. /evidence=ECO:0000255 4..93 123/423 (29%)
Filament 93..404 CDD:459643 108/370 (29%)
Coil 1A. /evidence=ECO:0000255 94..129 21/59 (36%)
Linker 1. /evidence=ECO:0000255 130..147 3/19 (16%)
Coil 1B. /evidence=ECO:0000255 148..239 28/104 (27%)
Linker 12. /evidence=ECO:0000255 240..262 6/28 (21%)
Coil 2. /evidence=ECO:0000255 263..401 48/148 (32%)
Tail. /evidence=ECO:0000255 402..452 15/54 (28%)
Blue background indicates that the domain is not in the aligned region.

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