DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lam and ngs

DIOPT Version :9

Sequence 1:NP_001245892.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001122237.1 Gene:ngs / 572199 ZFINID:ZDB-GENE-080722-29 Length:539 Species:Danio rerio


Alignment Length:559 Identity:132/559 - (23%)
Similarity:230/559 - (41%) Gaps:112/559 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSKSRR-----AGTATPQPGNTSTPRPPSAGPQPPPPSTHSQTASSPLSPTRHSRV-------- 52
            |||..|.     |.::|.|. ..|:|.|.....:....|....|....||.||.||:        
Zfish    27 MSSYRRHFEGGLAASSTLQV-RVSSPSPTRGATRHRSASYSRSTGRRALSGTRKSRMTSSVSMGT 90

  Fly    53 -------------------------------AEKVELQNLNDRLATYIDRVRNLETENSRLTIEV 86
                                           :|:.|:..||||||.||::||:||..|..|..|:
Zfish    91 LCLGMGFGGAGGAVDLDAAAAENQAFLSTRTSERKEMIALNDRLAVYIEKVRSLEQSNKLLETEI 155

  Fly    87 QTTRDTVTRETTNIKNIFEAELLETRRLLDD--TARDRARAEIDIKRLWEENEELKNKLDKKTKE 149
            ...:....: .:.::.::|.:|.|.:::.|.  ..||.|.|..|                     
Zfish   156 DAIKGHHVK-PSGLRLLYEEQLREMKKIADQMKIQRDLAVAAKD--------------------- 198

  Fly   150 CTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRV 214
              ...|.:.|       |..||.:|...|||         .|||     .|..|.:::..|.:|:
Zfish   199 --AMAGQLEM-------LKVKYEEALEARKK---------AELE-----IEAFRPDVDAATSARI 240

  Fly   215 DLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQM 279
            .||..:::|..||.|..:||.:||.|.........:::|...|.   ..|..:|::::|||:...
Zfish   241 ALEKRLENLEVELEFLQRIHKKEIEELMAQIYGSVAKVDVAFSL---PDLASALKQIQAQYDSIA 302

  Fly   280 QINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIR 344
            ..|..::.:.|:.|.|.|...::|...:...:.||:...:..:......::.|:..|..|...|:
Zfish   303 AQNLQDMDAWYKGKFQDLNNVSSRHMETARSAREEIMGYKKEMQNKQRELDALKNRNEALLLMIK 367

  Fly   345 DLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEAR 409
            :.:.....:.|.....|:.|::||..::.::...|:|||||:::|:||::||..|.||:.||::|
Zfish   368 EAQENYRKEEEELHTRIETLKEELRSIKGKIALLLREYQDLLNVKMSLEIEITTYRKLIEGEDSR 432

  Fly   410 LNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVK--------RKRAVVDESEDHSVADY--- 463
            |:......:....|.|..|.:|..|..|....:|||.        ...:.::.:...||.::   
Zfish   433 LSSMVGGLSLMGGSVSSGLVSSVSAYSSAAAAAAAVSSAASEKMISSNSTLNHNHHESVEEFTHE 497

  Fly   464 -YVSASAKGNVEIKEIDPEGKFVRLFNKGSEE--VAIGG 499
             .|..:.:..|.|:.:..:...::   |.:||  :.|.|
Zfish   498 QAVEMTERKTVLIRTVKTDEDTIQ---KDTEERTITISG 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_001245892.1 Filament 54..409 CDD:278467 93/356 (26%)
Ax_dynein_light <283..377 CDD:287215 16/93 (17%)
LTD 466..572 CDD:279300 7/36 (19%)
ngsNP_001122237.1 Filament_head 28..121 CDD:282575 17/93 (18%)
Filament 122..432 CDD:278467 93/357 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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