DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Krt86

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:XP_038935641.1 Gene:Krt86 / 407760 RGDID:1303215 Length:488 Species:Rattus norvegicus


Alignment Length:478 Identity:118/478 - (24%)
Similarity:192/478 - (40%) Gaps:134/478 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 GPQPPPPSTHSQTAS--SPLS----P----TRHSRVAEKVELQNLNDRLATYIDRVRNLETENSR 81
            ||.||..:|.|...|  :||:    |    .:|.   ||.:::.||.|.|.:||:||.||.:|  
  Rat    72 GPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHE---EKEQIKCLNSRFAAFIDKVRFLEQQN-- 131

  Fly    82 LTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWE--ENEELKNKLD 144
                                     :||||:                    |:  :|        
  Rat   132 -------------------------KLLETK--------------------WQFFQN-------- 143

  Fly   145 KKTKECTTAEGNVR-MYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEE---TRKN 205
               ::|  .|.||. ::|.....|..:.....||..:|..:||.|.:.:|..:|::||   .|..
  Rat   144 ---RKC--CESNVEPLFEGYIETLRREAECVEADSGRLAAELNHAQEAMEGYKKRYEEEVSLRAT 203

  Fly   206 LEQE-------------TLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSE--IDGR 255
            .|.|             .|.:.|||...::|.:|:.|..:::.:|    .||.....|:  :..:
  Rat   204 AENEFVALKKAIDVDCAYLRKSDLEANTEALTQEIDFLRRLYEEE----TRILHAHISDTSVIVK 264

  Fly   256 LSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRV 320
            :.:..|..:...:.|::|||::....:|.|.:|.|..|.:.::....|...:..::.||:.....
  Rat   265 MDNSRDLNMDCVIAEIKAQYDDIASRSRAEAESWYRTKCEEIKATVIRHGETLRRTREEINELNR 329

  Fly   321 RIDALNANINELEQANADLNARIRDLERQ----LDNDRERHGQEIDLLEKELIRLREEMTQQLKE 381
            .|..|.|.|...:..|..|.|.:...|:|    |.:.|.:..:    ||..|.:.:::|...|||
  Rat   330 IIQRLTAEIENAKCQNTKLEAAVTQSEQQGEAALTDARCKLAE----LEAALQKAKQDMACLLKE 390

  Fly   382 YQDLMDIKVSLDLEIAAYDKLLVGEEARL-------NI-------------------TPATNTAT 420
            ||::|:.|:.||:|||.|.:||.|||.||       |:                   .||.||..
  Rat   391 YQEVMNSKLGLDIEIATYRRLLEGEEQRLCEGVGSVNVCVSSSRGGVVCGDLCVSGTAPAVNTRV 455

  Fly   421 VQSFSQSLRNSTRATPSRRTPSA 443
            ..:....  |....||:...|.|
  Rat   456 CSAPCSG--NVVVGTPNACGPCA 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 95/379 (25%)
LTD 467..572 CDD:460003
Krt86XP_038935641.1 Keratin_2_head <3..102 CDD:465068 10/29 (34%)
Filament 105..418 CDD:459643 95/383 (25%)
Blue background indicates that the domain is not in the aligned region.

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