DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Krt83

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:XP_038935640.2 Gene:Krt83 / 407759 RGDID:1303024 Length:522 Species:Rattus norvegicus


Alignment Length:417 Identity:106/417 - (25%)
Similarity:181/417 - (43%) Gaps:104/417 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 GPQPPPPSTHSQTAS--SPLS----P----TRHSRVAEKVELQNLNDRLATYIDRVRNLETENSR 81
            ||.||..:|.|...|  :||:    |    .:|.   ||.:::.||.|.|.:||:||.||.:|  
  Rat    70 GPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHE---EKEQIKCLNSRFAAFIDKVRFLEQQN-- 129

  Fly    82 LTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWE--ENEELKNKLD 144
                                     :||||:                    |:  :|        
  Rat   130 -------------------------KLLETK--------------------WQFFQN-------- 141

  Fly   145 KKTKECTTAEGNVR-MYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEE------- 201
               ::|  .|.||. ::|.....|..:.....||..:|..:||.|.:.:|..:|::||       
  Rat   142 ---RKC--CESNVEPLFEGYIETLRREAECVEADSGRLAAELNHAQEAMEGYKKRYEEEVALRAT 201

  Fly   202 -------TRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSE--IDGRLS 257
                   .:|:::...|.:.|||...::|.:|:.|..:::.:|    .||.....|:  :..::.
  Rat   202 AENEFVALKKDVDCAYLRKSDLEANAEALTQEIDFLRRLYEEE----TRILHAHISDTSVIVKMD 262

  Fly   258 SEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRI 322
            :..|..:...:.|::|||::....:|.|.:|.|..|.:.::....|...:..::.||:......|
  Rat   263 NSRDLNMDCVIAEIKAQYDDIASRSRAEAESWYRTKCEEIKATVIRHGETLRRTREEINELNRII 327

  Fly   323 DALNANINELEQANADLNARIRDLERQ----LDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQ 383
            ..|.|.|...:..|..|.|.:...|:|    |.:.|.:..:    ||..|.:.:::|...|||||
  Rat   328 QRLTAEIENAKCQNTKLEAAVTQSEQQGEAALTDARCKLAE----LEAALQKAKQDMACLLKEYQ 388

  Fly   384 DLMDIKVSLDLEIAAYDKLLVGEEARL 410
            ::|:.|:.||:|||.|.:||.|||.||
  Rat   389 EVMNSKLGLDIEIATYRRLLEGEEQRL 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 93/377 (25%)
LTD 467..572 CDD:460003
Krt83XP_038935640.2 None
Blue background indicates that the domain is not in the aligned region.

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