DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Krt72

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001008809.2 Gene:Krt72 / 406227 RGDID:1303216 Length:520 Species:Rattus norvegicus


Alignment Length:521 Identity:122/521 - (23%)
Similarity:224/521 - (42%) Gaps:113/521 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SKSRRAGTATPQPGNTSTPRP--------PSAG-----PQPPPPSTHSQTA--SSPLSP------ 46
            |...|:|..|...|..|..||        .|||     |...||....|..  .|.|:|      
  Rat    60 SSGGRSGGFTLGHGGASGGRPGGFVGTVFGSAGLGPTCPSVCPPGGIPQVVVNKSLLAPLNVELD 124

  Fly    47 --TRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELL 109
              .:..|..|:.:::.||::.|::||:||.||.:|                           ::|
  Rat   125 PEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQN---------------------------QVL 162

  Fly   110 ETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQA 174
            ||:                    ||..::|.....:::.|        .::||..:.|..:....
  Rat   163 ETK--------------------WELLQQLDQNNSRRSLE--------PVHESYISNLQKQLEIL 199

  Fly   175 NADRKKLNEDLNEALKELERLRKQFE--------------ETRKNLEQETLSRVDLENTIQSLRE 225
            :.||.:|:.:|....:.:|..:|::|              ..:|:::...:::|:|:..:.|:.:
  Rat   200 SGDRVRLDSELRNMREVVEDCKKRYEVEINRRTAAENEFVVLKKDVDAAYMNKVELQAKVDSMTD 264

  Fly   226 ELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAK--LKQSLQELRAQYEEQMQINRDEIQS 288
            ::.|...:...||.:    .|:..|:....||.:.:.:  |...|.|:||||||....::.|.::
  Rat   265 DIKFFKVLFEGEIAQ----MQSHISDTSVILSMDNNRQLDLDSILAEVRAQYEEIAVKSKAETEN 325

  Fly   289 LYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDND 353
            :|:.|||.||..|.:..:....:..|:......|..:::.|..:::..::|...|.|.|::.|..
  Rat   326 MYQCKIQELQATAGQHGDDLKLTKSEITEINRLIQRIHSEIGNMKKQCSNLETAIADAEQRGDCA 390

  Fly   354 RERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARL-NITPATN 417
            .:....::|.||..|.:.:||:.:.|:|:|:||::|::||:|||.|.|||..||:|: ...|:  
  Rat   391 LKDARAKLDQLEGVLQQSKEELARMLREHQELMNVKLALDMEIATYRKLLESEESRMAGEYPS-- 453

  Fly   418 TATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEG 482
                 |.|.|:.:||.|.|.....|..       ...|.:::.....:....||:...:..||..
  Rat   454 -----SVSISVVSSTNAGPGGAGFSVG-------FGASSNYNYRPLALEVKTKGSCGSELKDPPA 506

  Fly   483 K 483
            |
  Rat   507 K 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 87/370 (24%)
LTD 467..572 CDD:460003 5/17 (29%)
Krt72NP_001008809.2 Head 1..133 19/72 (26%)
Keratin_2_head 15..130 CDD:465068 18/69 (26%)
Filament 133..446 CDD:459643 87/371 (23%)
Coil 1A 134..169 16/81 (20%)
Linker 1 170..188 3/25 (12%)
Coil 1B 189..280 15/94 (16%)
Linker 12 281..304 5/22 (23%)
Coil 2 305..443 45/137 (33%)
Tail 444..520 17/78 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 495..520 4/13 (31%)

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