DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Sync

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:XP_063144094.1 Gene:Sync / 362606 RGDID:1307970 Length:473 Species:Rattus norvegicus


Alignment Length:406 Identity:92/406 - (22%)
Similarity:163/406 - (40%) Gaps:88/406 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 QPGNTSTPRPPSAGPQPPP-------PSTHSQTASSPLSPTRHSRVAEKVELQNLNDRLATYIDR 71
            :|........|.|..:.|.       .:|.....:.|:..|..|...|.:||  |..|....:..
  Rat   112 RPEEVQFSEQPVAPAESPTACEGEMVTTTEESRPAQPIPGTEESLSVEDLEL--LEGRFQQCVQA 174

  Fly    72 VRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEEN 136
            |..||.|..||..|:...|:...:|...:    ..::|...:|       .|:||::...|.||.
  Rat   175 VSQLEEERDRLIHELVLLREPALQEVQQV----HQDILAAYKL-------HAQAELERDGLREEI 228

  Fly   137 EELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANAD-RKKLNEDLNEALKELERLRKQFE 200
            ..:|.||.|.||||...:..::.::....:.        || |:.|.....:...||.:||..::
  Rat   229 RTVKQKLFKVTKECVAYQYQLKCHQQDVAQF--------ADCREALTTRAAQLSGELTQLRDAYQ 285

  Fly   201 ETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLK 265
            :.::.|:|:      ||          :...|.....:.|||            |||::::..:.
  Rat   286 KQKEQLQQQ------LE----------APPTQSDGHFLQESR------------RLSTQFENLMA 322

  Fly   266 QSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANIN 330
            :|.|.|..:||.|:.            ::...:||..|....|...|:|:|..   :..|.|...
  Rat   323 ESRQGLEDEYEPQLL------------RLLERKEAGTRALQDTQAEIQEMREA---LRPLEAEAR 372

  Fly   331 ELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLK--------EYQDLMD 387
            :|:..|       |:||.|:...|::|.:|: |..:|.:...||..:||:        :.:::..
  Rat   373 QLQLQN-------RNLEDQITLVRQKHDEEV-LQYREQLEEMEERQRQLRSGVQVQQQKNKEMEQ 429

  Fly   388 IKVSLDLEIAAYDKLL 403
            ::.||..|::.|..:|
  Rat   430 LRTSLAEELSTYKAML 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 84/359 (23%)
LTD 467..572 CDD:460003
SyncXP_063144094.1 None
Blue background indicates that the domain is not in the aligned region.

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