DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and krt18a.1

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_848524.1 Gene:krt18a.1 / 352912 ZFINID:ZDB-GENE-030411-6 Length:431 Species:Danio rerio


Alignment Length:398 Identity:103/398 - (25%)
Similarity:184/398 - (46%) Gaps:59/398 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 PSTHSQTASSPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRET 97
            ||..|....|....|......||:.:||||||||:|:::||.||..||:|.:::   |:.:.:..
Zfish    63 PSMSSSIQVSASGSTGEIMGNEKMAMQNLNDRLASYLEKVRILEQANSKLELKI---REALEKRG 124

  Fly    98 TNIKNI--FEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMY 160
            .::.:.  |:..:.|.|:.:.|...:.||..:.|                         .|.|: 
Zfish   125 PDVHDYSRFQPIVDELRKKIFDATTNNARLVLQI-------------------------DNARL- 163

  Fly   161 ESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLRE 225
              .|::...||....:.|:.:..|:.       .|||..::|       .|:|::||:.|::|:|
Zfish   164 --AADDFRVKYESELSIRQGVEADIT-------GLRKVIDDT-------NLNRMNLESEIEALKE 212

  Fly   226 ELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLY 290
            ||.|..:.|..|:.|.|  .|...|.:...:.:.....|.|.::|:||:||:....|::|:::.:
Zfish   213 ELIFLKKNHDNEVMELR--NQISQSGVQVDVDAPKGQDLSQIMEEIRAKYEKMALKNQEELKAWH 275

  Fly   291 EDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRE 355
            |.:|..:|....:.:.:...:..|:...|.:|..|...:...:.....|...:||.|.:.:.:.|
Zfish   276 ESQITEVQVQVTQNTEALQGARSEVNELRRQIQTLEIELESQKNLKGSLEGTLRDTEMRYNMEIE 340

  Fly   356 RHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVG----------EEARL 410
            .....|..||.||.:||..:..|.:||:.|::||:.|:.|||.|.:||.|          |:.::
Zfish   341 NLNTIILQLEAELTQLRGNIQHQTQEYEALLNIKMKLEAEIATYRRLLDGGDFKLQDALEEQKKV 405

  Fly   411 NITPATNT 418
            .:...|.|
Zfish   406 KVMTVTQT 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 96/366 (26%)
LTD 467..572 CDD:460003
krt18a.1NP_848524.1 Head. /evidence=ECO:0000255 2..83 5/19 (26%)
Filament 83..394 CDD:459643 95/357 (27%)
Coil 1A. /evidence=ECO:0000255 84..119 19/37 (51%)
Linker 1. /evidence=ECO:0000255 120..136 1/15 (7%)
Coil 1B. /evidence=ECO:0000255 137..228 29/132 (22%)
Linker 12. /evidence=ECO:0000255 229..252 4/24 (17%)
Coil 2. /evidence=ECO:0000255 253..390 39/136 (29%)
Tail. /evidence=ECO:0000255 391..431 3/23 (13%)
Blue background indicates that the domain is not in the aligned region.

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