DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and zgc:65851

DIOPT Version :9

Sequence 1:NP_001245892.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_955828.1 Gene:zgc:65851 / 321113 ZFINID:ZDB-GENE-030131-9669 Length:562 Species:Danio rerio


Alignment Length:463 Identity:125/463 - (26%)
Similarity:221/463 - (47%) Gaps:78/463 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RRAGTATPQPGNTSTPRPPSAGPQPPPPSTHSQTASSPL-SPTRHSRVAEKVELQNLNDRLATYI 69
            |..|:.:|...::|.....::|.....|.....|.::.: :..:..|..||.:||.||||..|:|
Zfish    47 RTYGSPSPMITSSSYRSKLASGRGAFQPDNVDLTQTTAITNELKIIRTNEKEQLQGLNDRFVTFI 111

  Fly    70 DRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWE 134
            ::|.|||..|..|..||...|.. ..|.:.:.:::|.|:.|.|..:::.|.::::..:|..::.:
Zfish   112 EKVHNLEQHNKVLEAEVALLRQR-HNEPSRLHDLYEQEIRELRARVEELAHEKSQMHLDCVQMND 175

  Fly   135 ENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQF 199
            ..|.:|:|||::.:....||.:::.|                                       
Zfish   176 ALERVKDKLDEEARAREEAENSLKGY--------------------------------------- 201

  Fly   200 EETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAK- 263
               ||:::..||||::||..::||.:|::|..::|.:|:.|.:...|..      ::|.|.|.. 
Zfish   202 ---RKDVDDATLSRLELEKKVESLLDEIAFLRRVHEEELQELQASLQAT------QVSVEMDVSK 257

  Fly   264 --LKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALN 326
              |..:|:::|.|||.....|:.:.:..|..|...:.|||||.:::..::.:||...|.::.:..
Zfish   258 PDLAVALKDIRVQYESLSSRNQQQAEEWYRSKFATVTEAAARNNDALKQTKDELSEYRRQLQSRT 322

  Fly   327 ANINELEQANADLNARIRDLERQLDNDRERHGQE-------IDLLEKELIRLREEMTQQLKEYQD 384
            ..|..|:..|       ..|||||....:||..|       |..||..|...:.||::.|:||||
Zfish   323 LEIEALKAHN-------EALERQLAEMEDRHSNEIGELQDTIQQLESALRSTKGEMSRHLREYQD 380

  Fly   385 LMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKR 449
            |:::|::||:|||||.|||.|||.||:           |...::..|..:.|:.||.:.:..|:.
Zfish   381 LLNVKMALDIEIAAYRKLLEGEECRLS-----------SVGGAILQSAYSYPTSRTYTLSAYRRA 434

  Fly   450 AVVDESED 457
            ....|:|:
Zfish   435 GAKPETEE 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_001245892.1 Filament 54..409 CDD:278467 107/364 (29%)
Ax_dynein_light <283..377 CDD:287215 27/100 (27%)
LTD 466..572 CDD:279300
zgc:65851NP_955828.1 Filament_head 8..94 CDD:282575 7/46 (15%)
Filament 95..405 CDD:278467 107/365 (29%)
DUF1640 <311..400 CDD:285090 35/95 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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