DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Krt78

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001419435.1 Gene:Krt78 / 315324 RGDID:1591341 Length:1013 Species:Rattus norvegicus


Alignment Length:431 Identity:111/431 - (25%)
Similarity:203/431 - (47%) Gaps:66/431 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSKSRRAGTATPQPGNTSTPR-----PPSAGP---QPPPPSTHSQTA-SSPLSPTRHS------ 50
            :||..|..|::..:.....|.:     ....||   |.||....:.|. .|.|:|.:..      
  Rat    35 LSSSRRCRGSSCGRAWGAETRQGVRFGQGKGGPGLSQCPPGGIQAVTIDQSLLTPLKIEVDPQFQ 99

  Fly    51 --RVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTV-TRETTNIKNIFEAELLETR 112
              :..|..|::.||::.|::||:||.||.:|..|..:.:..:... .|....::.:|||.|...|
  Rat   100 VVKTQETQEIRTLNNQFASFIDKVRFLEQQNKVLETKWELLQQLQGNRSPQGLECVFEACLARLR 164

  Fly   113 RLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANAD 177
            :.|::..|:|...:.::|...::.:|.|.|.|::.                       |..|:  
  Rat   165 QQLEELQRERRALDSELKTYQDQEDEYKTKYDQEA-----------------------YKHAS-- 204

  Fly   178 RKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESR 242
                             ::..|...:|::::...|::|||..::||||.:.|..:::.:|:.:  
  Rat   205 -----------------VQNDFVVLKKDVDEVFQSKMDLEGNLESLREHVCFLTRLYEEELGQ-- 250

  Fly   243 RIKQTEYSEIDGRLSSEYDAKLKQS--LQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTS 305
              .||:.:::...||.:....|..|  :.|:||:|||..:.::.|.:::::.|.|.|||:|....
  Rat   251 --LQTQANDMSVVLSMDNSRCLDFSDIIAEVRARYEEITRTSKAEAEAVFQTKYQELQESAQLQG 313

  Fly   306 NSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIR 370
            ||..:...::...|..|..|.:.|..|.:.|..|.:.|.|.|:|.:........::|.||..|..
  Rat   314 NSMKEVQVQISQLRQVIQKLQSQIGSLRKQNDSLQSAIADAEQQGEMALRDAQAKLDELEGALRA 378

  Fly   371 LREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLN 411
            .:::|.|.|::||:||..|:|||:|||.|.:||..||.|::
  Rat   379 AKQDMAQMLRDYQELMGTKLSLDVEIAMYRRLLESEECRIS 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 96/357 (27%)
LTD 467..572 CDD:460003
Krt78NP_001419435.1 Keratin_2_head <63..101 CDD:465068 9/37 (24%)
Filament 104..417 CDD:459643 96/358 (27%)
KLF18_N 440..624 CDD:410566
KLF18_N 639..822 CDD:410566
KLF18_N 749..>943 CDD:410566
Blue background indicates that the domain is not in the aligned region.

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