Protein Alignment Lam and Lmntd2

DIOPT Version :9

• Sequence 1: NP_001245892.1
• Gene: Lam / 33782
• FlyBaseID: FBgn0002525
• Length: 622
• Species: Drosophila melanogaster
• Sequence 2: NP_001121012.1
• Gene: Lmntd2 / 309108
• RGDID: 1307439
• Length: 663
• Species: Rattus norvegicus
• Alignment Length: 654
• Identity: 122/654 - (18%)
• Similarity: 226/654 - (34%)
• Gaps: 192/654 - (29%)

  Fly    33 PSTHSQTASSPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRET 97
            |.:..::....:||   :....:.:..:|...:.|.:.||.:...::::|.        |.|...
  Rat     3 PKSCQESEDEQVSP---APAGVQPDSSDLGSPVGTPVARVASSCPQSAKLY--------TSTPMN 56

  Fly    98 TNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEG-NVRMYE 161
            .::|.....|.|:.|.|               :.|||:.|     |:.:........| |.|.|
  Rat    57 CSVKQQLAPETLDPRTL---------------RLLWEQRE-----LEIQALRWAVQNGQNARYY- 100

  Fly   162 SRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREE 226
                                     ..|:|:..:..:    |.:..|:..    |.|.:|.|..|
  Rat   101 -------------------------YILQEVAGIPPE----RNSKRQDKF----LRNQVQKLTLE 132

  Fly   227 LSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSL---QELRAQYEEQMQINRDEIQS 288
            |..:.:...||       ||            :.:.||:|:|   |:|.|           |:||
  Rat   133 LKAQKEQAQQE-------KQ------------QLEEKLQQNLCAMQQLEA-----------ELQS 167

  Fly   289 LYEDKIQRLQEAA--ARTSNSTHKSIEELRSTRVRIDALNANINELEQA----NADLNARIRDLE 347
            ..:..:.:|..::  .||..|...|:|.:.:..:|      ::::..|.    ||....|:.|::
  Rat   168 FQKSCLLQLARSSWVGRTLRSQTGSVEVVTAEVLR------DVSDSSQCAEVPNAGEGFRLEDVD 226

  Fly   348 --------------RQLDNDR---ERHGQEIDLLEKELIRLREEMTQQLKEYQ--DLMDIKVSLD 393
                          ....:|:   :....|:|..:.|......|...:..|:.  .|:|...|..
  Rat   227 WNSIAHRYPNLFSSLSFHSDQKLSQPPASEVDACDSECATKHTEKPTKTLEWSALPLVDTSSSES 291

  Fly   394 LEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSR--RTPSAAVKRKRAVVDESE 456
            :|                       :.:.|....|.:..:.|...  :.|:.|...:......|.
  Rat   292 IE-----------------------SDISSSQMVLHSGAKTTTGHPPQGPNLAASEQMQECTRSV 333

  Fly   457 DHSVADYYVSASAKGNVEIKE-------------IDPEG------------KFVRLFNKG-SEEV 495
            :....|.:.|.|...:..:.|             ::|.|            ||:|:.|:. :|.|
  Rat   334 NGYTEDLHKSWSPSCSKTVLESYTDLQHPYTRPQLNPFGCCLKIAAVSHREKFIRIINQSQAETV 398

  Fly   496 AIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWSADT-KASHEPPSSLVMKSQKWVSADNT 559
            .:||:.||:|:.: .|...|:|.....:.|...||||...| :...:.|.|......::.|:...
  Rat   399 DLGGFVLQQLVRD-FPVCMYRFPPGTLLAPQHHITVWGEGTSRTKKQLPVSSGQDPFQFQSSRGC 462

  Fly   560 RTILLNSEGEAVANLDRI------KRIVSQHT--SSSRLSRRRSVTAVDGNEQLYHQQGDPQQSN 616
            .|:|:|.:|:.::....:      .:|.:.:|  |..|.....|...||..:|.| :...||:..
  Rat   463 VTMLVNPQGQVLSEHQAVPCVTLGSKIFTDNTDWSIDRFPLSESEPNVDPGDQQY-RPSSPQKGR 526

  Fly   617 EKCA 620
            .|.|
  Rat   527 AKVA 530

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lam	NP_001245892.1	Filament	54..409	CDD:278467	67/383 (17%)
		Ax_dynein_light	<283..377	CDD:287215	20/116 (17%)
		LTD	466..572	CDD:279300	32/132 (24%)
Lmntd2	NP_001121012.1	LTD	385..477	CDD:279300	27/92 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0977
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810