DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Krt39

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001004130.1 Gene:Krt39 / 303523 RGDID:1303032 Length:481 Species:Rattus norvegicus


Alignment Length:496 Identity:132/496 - (26%)
Similarity:208/496 - (41%) Gaps:111/496 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PPSAGPQPPP-----PSTHSQTASSPLSPTRHSRVA------EKVELQNLNDRLATYIDRVRNLE 76
            |...|.:|.|     |:...:|.|....|...||.:      ||..:|.||:|||:|:::||.||
  Rat    48 PQGQGCRPSPCLYRCPNYLIRTYSFHPCPDDCSRCSDGINSHEKETMQILNERLASYLEKVRMLE 112

  Fly    77 TENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKN 141
            .||:.|..::|                  .|..:|..:|..          |....:...|:|:.
  Rat   113 GENADLEDKIQ------------------EECSKTLPILCP----------DYLSYYTTIEQLQQ 149

  Fly   142 KLDKKTKECTTAEGNVRMYES------RANELNNKYNQANADRKKLNEDLNEALKELERLRKQFE 200
            |:     .||.|| |.|:...      .|::|..||....:.|:.:..|.| .||::        
  Rat   150 KI-----LCTKAE-NSRLVSQIDNTKLAADDLRAKYEAELSLRQLVEADAN-GLKQI-------- 199

  Fly   201 ETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDA--- 262
                 |:..|||:.|||..:|||.|||......|.:|||..:       .::..|::.|..|   
  Rat   200 -----LDALTLSKADLEARVQSLTEELLCLKTNHEEEINSLQ-------CQLGDRINIEVTAAPS 252

  Fly   263 -KLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNS---THKSIEELRST----R 319
             .|.|.||::|.|||..::.||.:::..:..:::.|.:....:|..   ..|.|.|||.|    .
  Rat   253 VDLNQILQKMRCQYESIVETNRKDVEEWFNTQMEELNQQVVSSSQQQQCCQKDIIELRRTISALE 317

  Fly   320 VRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQD 384
            |.:.|.:...:..|...|:..||...|..|:.:       .|..||.::..:|..:.:|.:||:.
  Rat   318 VELQAQHRMRDSQECILAETEARYTALLAQIQS-------LIHNLEAQVAEIRSALQRQNQEYEV 375

  Fly   385 LMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNST---------------RA 434
            |:|||..|:.|||.|..||...:.||...|.|.|......::::...|               ||
  Rat   376 LLDIKSRLECEIATYRSLLESLDGRLPCNPCTTTWEPSCQARAMECLTPVYTSISLPGIHKPCRA 440

  Fly   435 T--PSR---RTPSAAVKRKRAVVDESEDHSVADYYVSASAK 470
            :  |||   :..:...:.|...|..|.:| |...|::..||
  Rat   441 SGPPSRILVKICTITKEIKDGKVISSHEH-VQPCYITRPAK 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 103/371 (28%)
LTD 467..572 CDD:460003 2/4 (50%)
Krt39NP_001004130.1 Head 1..90 10/41 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
Filament 90..400 CDD:459643 103/371 (28%)
Coil 1A 91..125 16/51 (31%)
Linker 1 126..136 2/19 (11%)
Coil 1B 137..237 35/126 (28%)
Linker 12 238..253 3/14 (21%)
Coil 2 254..397 44/149 (30%)
Tail 398..481 19/84 (23%)
Blue background indicates that the domain is not in the aligned region.

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