DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Krt73

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001008808.2 Gene:Krt73 / 300248 RGDID:1359597 Length:539 Species:Rattus norvegicus


Alignment Length:453 Identity:115/453 - (25%)
Similarity:214/453 - (47%) Gaps:75/453 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KSRRAGTATPQPGNTSTPRPPSAGPQPP----PPSTHSQTAS-SPLSP--------TRHSRVAEK 55
            ::|.:|.|....|.      .:.||..|    |...|..|.: |.|:|        .:..|..|:
  Rat    74 RNRASGFAGSMFGG------GALGPSNPSLCLPGGIHQVTVNKSLLAPLNVELDPEIQKVRAQER 132

  Fly    56 VELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRD-TVTRETTNIKNIFEAELLETRRLLDDTA 119
            .:::.||::.|::||:||.||.:|..|..:.:..:. .::....|::.::||.:...::.||..:
  Rat   133 EQIKALNNKFASFIDKVRFLEQQNQVLQTKWELLQQLDLSNCRRNLEPVYEAHISSLQKQLDSLS 197

  Fly   120 RDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNED 184
            .||.|.:.:::.:.:..|:.|.:.:::..:.||||                              
  Rat   198 GDRVRLDSELRGMRDAVEDCKKRYEEEINKRTTAE------------------------------ 232

  Fly   185 LNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEY 249
                        .:|...:|:::...:|:|:|:..:.:|..|:.|...::..||.:    .|:..
  Rat   233 ------------NEFVVLKKDVDAAYMSKVELQAKVDALDGEIKFLKCLYEGEITQ----MQSHI 281

  Fly   250 SEIDGRLSSEYDAK--LKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNS---TH 309
            |:....||.:.:..  |...:.|:|||||:....::.|.:.:|:.|.|.||.||.|..:.   |.
  Rat   282 SDTSVVLSMDNNRNLDLDSIIAEVRAQYEDIALKSKAEAEMVYQTKFQELQLAAGRHGDDLKHTR 346

  Fly   310 KSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREE 374
            ..|.||  ||: |..|.:.|..:::..::|...|.|.|::.|...:....::|.||:.|.:.:||
  Rat   347 NEISEL--TRL-IQRLRSEIESVKKQCSNLETAIADAEQRGDCALKDAQAKLDDLERALHQAKEE 408

  Fly   375 MTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPS 437
            :.:.|:|:|:||.:|::||:|||.|.|||.|||.|:: ...||..::...|.|...:..|..|
  Rat   409 LARMLREHQELMSMKLALDIEIATYRKLLEGEECRMS-GEHTNAVSISVISSSTTGAVGAGTS 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 94/360 (26%)
LTD 467..572 CDD:460003
Krt73NP_001008808.2 Head 1..130 14/61 (23%)
Keratin_2_head 15..127 CDD:465068 13/58 (22%)
Filament 130..443 CDD:459643 94/361 (26%)
Coil 1A 131..166 12/34 (35%)
Linker 1 167..185 2/17 (12%)
Coil 1B 186..277 21/136 (15%)
Linker 12 278..301 5/22 (23%)
Coil 2 302..440 50/140 (36%)
Tail 441..539 8/31 (26%)
Blue background indicates that the domain is not in the aligned region.

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