DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Krt20

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_775151.2 Gene:Krt20 / 286912 RGDID:628646 Length:431 Species:Rattus norvegicus


Alignment Length:440 Identity:116/440 - (26%)
Similarity:202/440 - (45%) Gaps:102/440 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 EKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDT 118
            ||:.:||||||||:|:::||:||..||:|..:::...:|....|....:.:.|::.|.:..:.|.
  Rat    77 EKLAMQNLNDRLASYLEKVRSLEQSNSKLEAQIKQWYETNAPSTIRDYSSYYAQIKELQDQIKDA 141

  Fly   119 ARDRARA--EIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKL 181
            ..:.||.  :||..:|..|:..||.:.::..:  .|.|.                          
  Rat   142 QIENARCVLQIDNAKLAAEDFRLKFETERGMR--ITVEA-------------------------- 178

  Fly   182 NEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQ 246
                     :|:.|.|.:::.       ||.:.|||..|:.|.::|:...:.|.:|:...||   
  Rat   179 ---------DLQGLSKVYDDL-------TLQKTDLEIQIEELNKDLALLKKEHQEEVEVLRR--- 224

  Fly   247 TEYSEIDGRLSSEYDA----KLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNS 307
                ::...::.|.||    .|.:.:.|:|.:||...|.|..|.:..:|.:.|.|::..  |.| 
  Rat   225 ----QLGNNVNVEVDAAPGLNLGEIMNEMRQKYEILAQKNLQEAKEQFERQTQTLEKQV--TVN- 282

  Fly   308 THKSIEELRSTRVRIDALNANINELE-QANADLNARIRDLERQLDNDRERHGQE-------IDLL 364
                |||||.|.|::..|..:...|| :..:.|:.: ..|||.|:..:.|:..:       :..|
  Rat   283 ----IEELRGTEVQVTELRRSYQTLEIELQSQLSMK-ESLERTLEETKARYASQLAAIQEMLSSL 342

  Fly   365 EKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLR 429
            |.:|:::|.:..:|.:||..|:|||..|:.|||.|.:||.||:.:        |...|      .
  Rat   343 EAQLMQIRSDTERQNQEYNILLDIKTRLEQEIATYRRLLEGEDIK--------TTEYQ------L 393

  Fly   430 NSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEID 479
            |:..|...::|     ::.:.||:|..|..|    ||:      |:|||:
  Rat   394 NTLEAKDIKKT-----RKIKTVVEEVVDGKV----VSS------EVKEIE 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 100/368 (27%)
LTD 467..572 CDD:460003 4/13 (31%)
Krt20NP_775151.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
Filament 76..385 CDD:459643 99/366 (27%)
Coil 1A 77..112 18/34 (53%)
Linker 1 113..130 2/16 (13%)
Coil 1B 131..222 25/134 (19%)
Linker 12 223..245 6/28 (21%)
Coil 2 246..384 46/145 (32%)
Tail 385..431 16/73 (22%)
Blue background indicates that the domain is not in the aligned region.

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