DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and GFAP

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001350775.1 Gene:GFAP / 2670 HGNCID:4235 Length:472 Species:Homo sapiens


Alignment Length:477 Identity:138/477 - (28%)
Similarity:214/477 - (44%) Gaps:104/477 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RRAGTATPQPGNTSTPRPPSAGPQPPPPSTHSQTASSPLSP-TRHSRVAEKVELQNLNDRLATYI 69
            ||.|..|    ..|..|.|     ||.|:....:.:..|:. .:.:|.:|:.|:..||||.|:||
Human    29 RRLGPGT----RLSLARMP-----PPLPTRVDFSLAGALNAGFKETRASERAEMMELNDRFASYI 84

  Fly    70 DRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWE 134
            ::||.||.:|..|..|:...|   .:|.|.:.::::|||.|.|..||....:.||.|::...|.:
Human    85 EKVRFLEQQNKALAAELNQLR---AKEPTKLADVYQAELRELRLRLDQLTANSARLEVERDNLAQ 146

  Fly   135 ENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQF 199
            :...::.||..:|.....||.|:..|...|:|                                 
Human   147 DLATVRQKLQDETNLRLEAENNLAAYRQEADE--------------------------------- 178

  Fly   200 EETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINE--SRRIKQTEYSEIDGRLSSEYDA 262
                     .||:|:|||..|:||.||:.|..:||.:|:.|  .:..:|..:.|:|       .|
Human   179 ---------ATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELD-------VA 227

  Fly   263 K--LKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDAL 325
            |  |..:|:|:|.|||.....|..|.:..|..|...|.:||||.:....::..|....|.::.:|
Human   228 KPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQLQSL 292

  Fly   326 NANINELEQANADLNARIRDLERQLDNDRERHGQE-------IDLLEKELIRLREEMTQQLKEYQ 383
            ..::..|...|       ..||||:....|||.:|       :..||:|...|::||.:.|:|||
Human   293 TCDLESLRGTN-------ESLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEYQ 350

  Fly   384 DLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRK 448
            ||:::|::||:|||.|.|||.|||.|:       |..||:||.......::|             
Human   351 DLLNVKLALDIEIATYRKLLEGEENRI-------TIPVQTFSNLQIRGGKST------------- 395

  Fly   449 RAVVDESEDHSVADYYVSASAK 470
                .:.|:|.|..|..|.:.:
Human   396 ----KDGENHKVTRYLKSLTIR 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 114/365 (31%)
LTD 467..572 CDD:460003 0/4 (0%)
GFAPNP_001350775.1 Filament_head 4..66 CDD:461414 11/45 (24%)
Filament 68..376 CDD:459643 114/366 (31%)

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