DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and F10C1.8

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_495132.2 Gene:F10C1.8 / 266725 WormBaseID:WBGene00017327 Length:160 Species:Caenorhabditis elegans


Alignment Length:211 Identity:41/211 - (19%)
Similarity:72/211 - (34%) Gaps:72/211 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LRAFGRFFTKHPLAGNGLVYGTLYVGAEFSQQTITRKL-----LTDPPQDIDRPTLARYAVM--- 61
            :.|....||::          ||..|....::.|.|||     |:..|..|.....|:.:::   
 Worm   122 INAIREGFTRY----------TLNAGITELREAICRKLKEENGLSYAPDQILVSNGAKQSLLQAV 176

  Fly    62 ------GTFIYSPILYNWYKWLDKTFPGTAKRIIVKKLLLDQFILTPPLLVIFFTGMSLMERQSS 120
                  |..:..|..| |..:.::.....|..:::...:.:.|:|.|            .:.:|.
 Worm   177 LAVCSPGDEVIIPAPY-WVSYTEQARLADATPVVIPTKISNNFLLDP------------KDLESK 228

  Fly   121 ITEECRQKFL-----PT---FARSCL------------------------FWMPAQTLNFVLVPP 153
            :||:.|...|     ||   :.:|.|                        .:.||...:|..:|.
 Worm   229 LTEKSRLLILCSPSNPTGSVYPKSLLEEIARIIAKHPRLLVLSDEIYEHIIYAPATHTSFASLPD 293

  Fly   154 KF-RVVYVG--SCAFA 166
            .: |.:.|.  |.|||
 Worm   294 MYERTLTVNGFSKAFA 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 28/157 (18%)
LTD 467..572 CDD:460003
F10C1.8NP_495132.2 LTD 38..145 CDD:460003 6/32 (19%)
Blue background indicates that the domain is not in the aligned region.

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