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Protein Alignment Lam and Ina

DIOPT Version :9

Sequence 1:	NP_001245892.1	Gene:	Lam / 33782	FlyBaseID:	FBgn0002525	Length:	622	Species:	Drosophila melanogaster
Sequence 2:	NP_062001.2	Gene:	Ina / 24503	RGDID:	2911	Length:	506	Species:	Rattus norvegicus

Alignment Length:	463	Identity:	142/463 - (30%)
Similarity:	215/463 - (46%)	Gaps:	90/463 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly    51 RVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLL 115
            |..||.:||.||||.|.:|::|..|||:|..|..|:...|.. ..|.:.:..:|:.||.|.|..|
  Rat    91 RTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQR-HAEPSRVGELFQRELRELRAQL 154

  Fly   116 DDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKK 180
            ::.:..||:|.::...|.||.:.|:.:.::               |||..|        .|:|
  Rat   155 EEASSARAQALLERDGLAEEVQRLRARCEE---------------ESRGRE--------GAER-- 194

  Fly   181 LNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIK 245
                   |||..:|          :::..||:|:|||..::||.:||:|..|:|.:|:.|.....
  Rat   195 -------ALKAQQR----------DVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATL 242

  Fly   246 QTEYSEIDGRLSSEYD---AK--LKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTS 305
            |.     ..:.::|.|   ||  |..:|:|:|||||.....|....:..|:.|...|.|.|||::
  Rat   243 QA-----SSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARST 302

  Fly   306 NSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQE-------IDL 363
            .:...|.||:...|.::.|....|..|..||..|..:|.:||       |||..|       |..
  Rat   303 EAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELE-------ERHSAEVAGYQDSIGQ 360

  Fly   364 LEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEAR----------LNITP---- 414
            ||.:|...:.||.:.|:|||||:::|::||:|||||.|||.|||.|          ||..|
  Rat   361 LESDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLNPLPNPSY 425

  Fly   415 -------ATNTATVQSFSQSLRNSTRATPSRRTPSAA--VKRKRAVVDESEDHSVADYYVSASAK 470
                   ::.|:.|.|...||:.............|:  |.:|.:.|.||.:.::.:..||....
  Rat   426 LLPPRILSSTTSKVSSAGLSLKKEEEEEEEEEEEGASKEVTKKTSKVGESFEETLEETVVSTKKT 490

  Fly   471 GNVEIKEI 478
            ....|:||
  Rat   491 EKSTIEEI 498

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.