DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and ifa-3

DIOPT Version :9

Sequence 1:NP_001245892.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_510649.3 Gene:ifa-3 / 181699 WormBaseID:WBGene00002051 Length:581 Species:Caenorhabditis elegans


Alignment Length:614 Identity:164/614 - (26%)
Similarity:292/614 - (47%) Gaps:88/614 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TATPQPGNTSTPRPPSAGPQ--PPPPSTHSQTASSPLSP--------TRHSRVAEKVELQNLNDR 64
            |.|....|..|   |::|.:  .....||:.:.:|.|||        .|..|..||.|:..||||
 Worm    20 TVTSSTQNYGT---PASGNRVLKIVTETHTSSVASGLSPYGQGAASTIRDDREREKKEITELNDR 81

  Fly    65 LATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDI 129
            ||:||.:||.|..:|.:|..::...:....:.|.::|.::|.|:.....::.:|.:|...||.:|
 Worm    82 LASYIGKVRFLAAQNRKLEADLNVLQSRFGKSTGSVKIMYEMEITTATNVVKETGKDHEEAEKEI 146

  Fly   130 KRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKK---LNEDLNEALKE 191
            .::.::.:||:.|.::..|  ..||..:::.|.... |:|...:.|..:::   |.|::....||
 Worm   147 GKIKDQLDELRKKFEEAQK--GRAEDRLKIDELLVT-LSNLEAEINLLKRRIALLEEEVARLKKE 208

  Fly   192 LERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRL 256
            ..||..:.:..|..|:||||.|:|.:|.:.::.||:.|           .:|..:||..::..:.
 Worm   209 NFRLTSELQRVRSELDQETLLRIDNQNKVTTILEEIDF-----------MKRGFETELKDLQAQA 262

  Fly   257 SSE--------YDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIE 313
            :.:        :..:|..|::::||:|:..|..||::::|..:.::|.:       :..|::...
 Worm   263 ARDTTSENREYFKNELMNSIRDIRAEYDRFMAGNRNDLESWSQIRVQEI-------NTQTNRQNA 320

  Fly   314 ELRSTRVRIDALNANINELEQANADLNAR-------IRDLERQLDNDRERHGQEIDLLEKELIRL 371
            |:...|..:..|::.::||:..:|:|.||       :.||..||::|:..:...::..:.::.:|
 Worm   321 EINHKRDEVKRLHSQVSELKSKHAELAARNGLLEKQLEDLNYQLEDDQRSYEAALNDKDAQVRKL 385

  Fly   372 REEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATP 436
            |||....|.|.|.|:|.|.:||.|:..|.::|.|                    .|..|..|...
 Worm   386 REECQALLVELQMLLDTKQTLDGELKVYRRMLEG--------------------NSEENGLRQLV 430

  Fly   437 SRRTPSAAVKRK------RAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFN-KGSEE 494
            .:...::|:..:      |.|..|   ||....| ..||||||.|||:.||||||.|.| ...:|
 Worm   431 EKVVRTSAINEEVDTETMRVVKGE---HSSRTSY-QRSAKGNVSIKEVSPEGKFVILENTHRDKE 491

  Fly   495 VAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSAD-N 558
            ..:|.|:|:|.|:.| ....:.|.....:.|...:.:::.....:: ||..||.:......|. |
 Worm   492 EPLGDWKLKRKIDGK-REIVFTFPSDYILHPVQTVKIFARGNGVAN-PPEVLVFEGDDTFGAGAN 554

  Fly   559 TRTILLNSEGEAVANLDRIKRIVSQHTSS 587
            .:|||.|:.||..|.  .::|...|.|:|
 Worm   555 VQTILYNNSGEERAT--HMQRQSQQTTTS 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_001245892.1 Filament 54..409 CDD:278467 97/372 (26%)
Ax_dynein_light <283..377 CDD:287215 22/100 (22%)
LTD 466..572 CDD:279300 38/107 (36%)
ifa-3NP_510649.3 Filament 71..419 CDD:278467 96/368 (26%)
DUF342 <140..209 CDD:302792 16/71 (23%)
DUF904 181..245 CDD:283624 20/63 (32%)
LTD 462..570 CDD:279300 39/111 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 196 1.000 Domainoid score I1825
eggNOG 1 0.900 - - E1_KOG0977
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H7818
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D204815at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.780

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