DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lam and Krt82

DIOPT Version :10

Sequence 1:NP_476616.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_444479.2 Gene:Krt82 / 114566 MGIID:2149248 Length:516 Species:Mus musculus


Alignment Length:420 Identity:97/420 - (23%)
Similarity:183/420 - (43%) Gaps:62/420 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 PSTHSQTASSPL----SPT-RHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIE---VQTT 89
            |.|.:::...||    .|| :..:..||.:::.||:|.|::|::||.||.:|..|..:   :|..
Mouse    92 PVTINESLLVPLELEIDPTVQRVKRDEKEQIKCLNNRFASFINKVRFLEQKNKLLETKWNFMQQQ 156

  Fly    90 RDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAE 154
            |..    .:|::.:||..:...||.||..:.|..|.|.::..|.|..|..|.|.:::......||
Mouse   157 RSC----QSNMEPLFEGYICALRRQLDCVSGDHGRLEAELCSLQEALEGYKKKYEEELSLRPCAE 217

  Fly   155 GNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENT 219
                                                      .:|...:|:::...|.:.|||..
Mouse   218 ------------------------------------------NEFVTLKKDVDTAFLVKADLETN 240

  Fly   220 IQSLREELSFKDQIHSQEINESRRIKQTEYSE--IDGRLSSEYDAKLKQSLQELRAQYEEQMQIN 282
            :::|..|:.|...:..:||.    :.|::.||  :..::.:..:..:...:.|::|||::....:
Mouse   241 LEALEHEIEFLKALFEEEIG----LLQSQISETSVIVKMDNSRELDVDGIVAEIKAQYDDIASRS 301

  Fly   283 RDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLE 347
            :.|.::.|:.:.:.|:..|....::......|:......|..|..:|..::.....|...|...|
Mouse   302 KAEAEAWYQCRYEELRLTAGNHCDNLRNRKNEILEMNKLIQRLQQDIEAVKGQRCKLEGAIAQAE 366

  Fly   348 RQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARL-- 410
            :|.:........::..||:.|.:.:::|...||:||::|:.|:.||:|||.|.:||.|||.||  
Mouse   367 QQGEAALTDAKCKLAGLEEALQKAKQDMACLLKQYQEVMNCKLGLDIEIATYRRLLEGEEHRLCE 431

  Fly   411 NITPATNTATVQSFSQSLRNSTRATPSRRT 440
            .|.|...:.:....:.........||..||
Mouse   432 GIGPVNISVSSSKGAVLYEPCVMGTPMLRT 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_476616.1 Filament 54..409 CDD:459643 83/359 (23%)
LTD 467..572 CDD:460003
Krt82NP_444479.2 Head 1..118 6/25 (24%)
Keratin_2_head <61..114 CDD:465068 6/21 (29%)
Filament 118..428 CDD:459643 83/359 (23%)
Coil 1A 119..153 12/33 (36%)
Linker 1 154..163 2/12 (17%)
Coil 1B 164..264 27/145 (19%)
Linker 12 265..281 2/15 (13%)
Coil 2 282..425 34/142 (24%)
Tail 426..516 9/36 (25%)
Blue background indicates that the domain is not in the aligned region.

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