DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lam and nefl

DIOPT Version :9

Sequence 1:NP_001245892.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:XP_002932628.2 Gene:nefl / 100216135 XenbaseID:XB-GENE-492106 Length:554 Species:Xenopus tropicalis


Alignment Length:535 Identity:147/535 - (27%)
Similarity:247/535 - (46%) Gaps:102/535 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SSKSRRAGTATPQPGNTSTPRPPSAGPQPPPPST-------HSQTASSPL--------------- 44
            :|..||...::|:....|:...||.....|..|:       .|.::||.|               
 Frog    11 TSYKRRVVESSPRVHIRSSYVSPSRTTYSPVVSSTMRRSYAASSSSSSSLLHGVDTMDLSQVAAI 75

  Fly    45 -SPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAEL 108
             |..:..|..||.:||:||||.|.:|:||..||..|..|..|:...|.. ..|.:.:::::|.|:
 Frog    76 SSDLKIVRTQEKAQLQDLNDRFANFIERVHELEQRNKVLEAELLLLRQK-HNEPSRLRDLYEQEV 139

  Fly   109 LETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQ 173
            .|.|...::...||       :.:..|.|.|::.|              |:.:.|..|       
 Frog   140 RELRLAQEEATGDR-------QTMRNERERLEDAL--------------RLLQGRYEE------- 176

  Fly   174 ANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEI 238
                         |||.. |....:..:.||..:...|:||:||..:.||.:|::|..::|.:|:
 Frog   177 -------------EALSR-EDAEARLLDVRKEADMAALARVELEKRMDSLLDEIAFLKKVHEEEL 227

  Fly   239 NESRRIKQTEYSEIDGRLSSEYD-AK--LKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEA 300
            .:.:  .|.:|::|    |.|.: ||  |..:|:::|||||:....|....:..::.:...|.::
 Frog   228 AQLQ--SQVQYAQI----SLEVEVAKPDLSSALRDIRAQYEKLAAKNMQSAEDWFKSRFTVLTQS 286

  Fly   301 AARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLE 365
            |||.:::...:.:|:..:|..:.|....|......|..|..:|::||.:...:.......|:.||
 Frog   287 AARNTDAVRAAKDEVSESRRMLSAKGLEIEACRGVNDALERQIQELEEKQSGEIAGMQDAINKLE 351

  Fly   366 KELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPA-------TNTATVQS 423
            :||...:.||.:.|||||||:::|::||:|||||.|||.|||.||:.:..       |.:|.|..
 Frog   352 EELRNTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFSGVGAITSGYTQSAPVFG 416

  Fly   424 FS-QSLRNSTRATPSRRTP---SAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKF 484
            .| .||::|:..| ||..|   |:.|:.::..::|:.:.|.|:   .|.|:...|.:|       
 Frog   417 RSAYSLQSSSYMT-SRAFPTYYSSHVQEEQLDIEETIESSRAE---EAKAEAPEEEEE------- 470

  Fly   485 VRLFNKGSEEVAIGG 499
                 :..||.|.||
 Frog   471 -----EAGEEEAEGG 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_001245892.1 Filament 54..409 CDD:278467 105/357 (29%)
Ax_dynein_light <283..377 CDD:287215 20/93 (22%)
LTD 466..572 CDD:279300 9/34 (26%)
neflXP_002932628.2 Filament_head 11..84 CDD:368088 14/72 (19%)
Filament 85..395 CDD:365827 105/358 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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