DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lam and nefmb

DIOPT Version :9

Sequence 1:NP_001245892.1 Gene:Lam / 33782 FlyBaseID:FBgn0002525 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001116752.1 Gene:nefmb / 100033387 ZFINID:ZDB-GENE-070103-4 Length:717 Species:Danio rerio


Alignment Length:540 Identity:129/540 - (23%)
Similarity:233/540 - (43%) Gaps:115/540 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSKSRRAGTATPQPGNTSTPRPPSAGPQPPPPSTHSQTASSPLSPTRHSRVA------------ 53
            |||..|||       ..|.:.|||::       :..|...|||||..|.:.|:            
Zfish     4 MSSSRRRA-------LETRSIRPPTS-------TVRSWAKSSPLSFKRTTNVSSSRAAYSPAVLA 54

  Fly    54 -------------------EKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTN 99
                               ||.:||.||||.|:|||:||.||.:|.:|..|:|..:.....::..
Zfish    55 SPDGFELSAALNGDPVRNNEKEQLQGLNDRFASYIDKVRFLEEQNKQLEAEIQALKQQKLSQSLQ 119

  Fly   100 IKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRA 164
             .:.::.||.:.|..|:...:::|:..:|...:.|:.:.::.:                 ||   
Zfish   120 -TDAYDRELQDLRCALEQLHKEKAQILLDTDHMDEDLQRIRER-----------------YE--- 163

  Fly   165 NELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSF 229
                        |..:|.|.::.|::.:          :|:.:...|.::|||..:|:|.:|:.|
Zfish   164 ------------DESRLREHMDAAIRGM----------KKDKDDSVLMKMDLERKVQALVDEMDF 206

  Fly   230 KDQIHSQEINE-SRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDK 293
            ..|.|.:||:| ..:::..:...::.|...:.|  :..:|:::|||.:.....|..:.:.:::.:
Zfish   207 LRQNHEEEISELLAQLQAAQVPVVEMRDLQKTD--ITSALRDIRAQLDGLSSKNLQQAEEVFKCR 269

  Fly   294 IQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHG 358
            ...|.:||.:..::.....:|:...|.:|...:..:..|......|..::.|:|.:.:.|...:.
Zfish   270 YAMLTDAAEQNKDAIKSIRDEIGDYRRQIQGKSVELEALRGTKDSLERQLHDIEDRHNTDVSSYQ 334

  Fly   359 QEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQS 423
            :.|..||.:|...:.||.:.|:|||||:::|::||.|||||.|||.|||.|.       .|.|.:
Zfish   335 EMIHQLENDLKGTKWEMARHLREYQDLLNVKMALDAEIAAYRKLLEGEETRF-------CAAVTA 392

  Fly   424 FSQS--------------LRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVE 474
            |:.|              :...|:.........|.|.::.|...|.|:....:..|:||   ..:
Zfish   393 FAYSQPKTSKVKHKIVEEIIEETKGESDIDDDLAEVAKEVAEEAEEEEKEEEEETVAAS---QAK 454

  Fly   475 IKEIDPEGKFVRLFNKGSEE 494
            :....|||:.......|.||
Zfish   455 VSSAAPEGEEEEEEEGGDEE 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamNP_001245892.1 Filament 54..409 CDD:278467 91/355 (26%)
Ax_dynein_light <283..377 CDD:287215 17/93 (18%)
LTD 466..572 CDD:279300 8/29 (28%)
nefmbNP_001116752.1 Filament_head 5..68 CDD:282575 17/76 (22%)
Filament 73..385 CDD:278467 91/356 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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