DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hel25E and ddx39a

DIOPT Version :9

Sequence 1:NP_723089.1 Gene:Hel25E / 33781 FlyBaseID:FBgn0014189 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_001016000.1 Gene:ddx39a / 548754 XenbaseID:XB-GENE-966447 Length:427 Species:Xenopus tropicalis


Alignment Length:425 Identity:347/425 - (81%)
Similarity:388/425 - (91%) Gaps:4/425 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADND---DLLDYEDEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFE 62
            |.:.|   :|||||::::.:..|.......:|:|||:|||||||||||||||||:||:|||||||
 Frog     1 MTEQDVENELLDYEEDDEPQAPAETAAPIARKEVKGSYVSIHSSGFRDFLLKPELLRSIVDCGFE 65

  Fly    63 HPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQIS 127
            |||||||||||||:||||||||||||||||||||||||||.|..:.... |||||||||||||||
 Frog    66 HPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQTEAVEGQVT-VLVMCHTRELAFQIS 129

  Fly   128 KEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVL 192
            |||||||||||||||||||||::|:|||:|::...||||||||||||||:|:|.||||.:|||||
 Frog   130 KEYERFSKYMPTVKVAVFFGGLSIKKDEDTIRKSCPHIVVGTPGRILALVRSKILNLKNVKHFVL 194

  Fly   193 DECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLH 257
            |||||||||||||||||||||.|||.||.|||||||||:|||||:|||||||||:||||.|||||
 Frog   195 DECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLH 259

  Fly   258 GLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEE 322
            ||||:||.||::|||:|||:||||||||||||||||||||:||:|||||||||||.|||.|:|||
 Frog   260 GLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIAIHRNMSQEE 324

  Fly   323 RLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 387
            ||:|||||||||:||||||||||||||||||||||||||||||||||||||||||||||||||||
 Frog   325 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 389

  Fly   388 VSDENDAKILNEVQDRFDVNISELPEEIDLSTYIE 422
            ||||.||||||:|||||:||:.|||:|||:|||||
 Frog   390 VSDEEDAKILNDVQDRFEVNVGELPDEIDISTYIE 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel25ENP_723089.1 DEADc_DDX39 40..248 CDD:350708 176/207 (85%)
SF2_C_DEAD 259..388 CDD:350174 115/128 (90%)
ddx39aNP_001016000.1 DEADc_DDX39 43..250 CDD:350708 176/207 (85%)
SF2_C_DEAD 261..390 CDD:350174 115/128 (90%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 284 1.000 Domainoid score I1602
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 709 1.000 Inparanoid score I642
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D274153at33208
OrthoFinder 1 1.000 - - FOG0001601
OrthoInspector 1 1.000 - - otm48424
Panther 1 1.100 - - LDO PTHR47958
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1003
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

Return to query results.
Submit another query.