DRSC/TRiP Functional Genomics Resources

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Protein Alignment tomb and lin54

DIOPT Version :9

Sequence 1:NP_608936.1 Gene:tomb / 33779 FlyBaseID:FBgn0031715 Length:243 Species:Drosophila melanogaster
Sequence 2:NP_001070035.1 Gene:lin54 / 560688 ZFINID:ZDB-GENE-060929-440 Length:771 Species:Danio rerio


Alignment Length:238 Identity:60/238 - (25%)
Similarity:86/238 - (36%) Gaps:86/238 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PSPKKRSVDKADGKKGKGQGAGGVKGCCCKRSQCIKNYCDCYQSMAICTKFCRCVGCRNTE---- 62
            |...|..:.|  ||:|:...... |||.||:|.|:||||:||::..:|:..|:|:||:|.|    
Zfish   599 PVAFKPKIGK--GKEGESDRRHS-KGCNCKKSGCLKNYCECYEAKIMCSSICKCMGCKNFEESPE 660

  Fly    63 ---VRELVDPNSVAKNSSAVKRQKAAAMSAKAAAAAAKAGIDVQGKALQVAASTLALPGKALMTP 124
               :..|.|...|     .|::|           .|||..:..|            :......|.
Zfish   661 RKTLMHLADAAEV-----RVQQQ-----------TAAKTKLSSQ------------ISDLLTRTT 697

  Fly   125 PKYTLVAGKPPMASSHINPIPISRPIATAATPARAVKQPAEPPMPVNLIIPVRHDDRRDRNLFVQ 189
            |..|...||.|.               |..|     |:.||                        
Zfish   698 PAITSGGGKLPY---------------TFVT-----KEVAE------------------------ 718

  Fly   190 PVNAALLECMLIQATEAEQLGLNELQVCQLVLEEFMRGYKNIL 232
                |..:|:|.||.:||.....:....:|:||||.|....|:
Zfish   719 ----ATCDCLLEQAEQAELTNQPQAMAERLILEEFGRCLHRII 757

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tombNP_608936.1 TCR 28..62 CDD:281618 17/33 (52%)
lin54NP_001070035.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..44
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 68..105
TCR 545..>566 CDD:281618
DNA-binding. /evidence=ECO:0000250|UniProtKB:Q6MZP7 546..559
Linker. /evidence=ECO:0000250|UniProtKB:Q6MZP7 606..619 4/14 (29%)
TCR 619..654 CDD:281618 18/35 (51%)
DNA-binding. /evidence=ECO:0000250|UniProtKB:Q6MZP7 622..635 8/12 (67%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1171
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12446
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.000

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