DRSC/TRiP Functional Genomics Resources

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Protein Alignment tomb and Lin54

DIOPT Version :10

Sequence 1:NP_608936.1 Gene:tomb / 33779 FlyBaseID:FBgn0031715 Length:243 Species:Drosophila melanogaster
Sequence 2:NP_001415506.1 Gene:Lin54 / 305171 RGDID:1311361 Length:767 Species:Rattus norvegicus


Alignment Length:240 Identity:58/240 - (24%)
Similarity:92/240 - (38%) Gaps:72/240 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PSPKKRSVDKADGKKGKGQGAGGVKGCCCKRSQCIKNYCDCYQSMAICTKFCRCVGCRNTEVREL 66
            |...|..:.|  ||:|:...... |||.||||.|:||||:||::..:|:..|:|:||:|.|    
  Rat   594 PEAFKPKIGK--GKEGESDRRHS-KGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFE---- 651

  Fly    67 VDPNSVAKNSSAVKRQKAAAMSAKAAAAAAKAGIDVQGKALQVAASTLALPGKALMTPPKYTLVA 131
                       ....:|.....|.||....:.         |.||.|                  
  Rat   652 -----------ESPERKTLMHLADAAEVRVQQ---------QTAAKT------------------ 678

  Fly   132 GKPPMASSHINPIPISRPIATAATPARAVKQPAEPPMPVNLIIPVRHDDRRDRNLFVQPVNAALL 196
                ..||.|:.: ::||     |||   .......:|...:              .:.|..|..
  Rat   679 ----KLSSQISDL-LTRP-----TPA---LNSGGGKLPFTFV--------------TKEVAEATC 716

  Fly   197 ECMLIQATEAEQLGLNELQVCQLVLEEFMRGYKNILEKICEYSKD 241
            .|:|.||.:|::.|.::....:::||||.|...:::....:...|
  Rat   717 NCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSD 761

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tombNP_608936.1 TCR 28..62 CDD:461001 18/33 (55%)
Lin54NP_001415506.1 None

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