DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cap-D3 and Cap-D2

DIOPT Version :9

Sequence 1:NP_001162887.1 Gene:Cap-D3 / 33778 FlyBaseID:FBgn0051989 Length:1267 Species:Drosophila melanogaster
Sequence 2:NP_651709.1 Gene:Cap-D2 / 43491 FlyBaseID:FBgn0039680 Length:1380 Species:Drosophila melanogaster


Alignment Length:1349 Identity:256/1349 - (18%)
Similarity:474/1349 - (35%) Gaps:403/1349 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 SVLQQRAEKFWTMAMCLQDGGHQETQLQLLRD---LSAIIRAMRDENQASYSNTHDNWSNLIG-- 95
            :|||...||.|:..:.      :|..:.||.|   .:..:..:|.:|:    :..|....::|  
  Fly   179 NVLQCPLEKLWSPPVA------EEDFINLLCDPCYRTIELLPLRMDNK----HVFDTIFQILGTS 233

  Fly    96 ---FSPALGYLTYIYSLVSLVVLPEHVQQAAPQQLNENINMQLALNAATTYLLTLTIPGAKIFGV 157
               |:.|   :|:...::.::...||...:.               ||...||......:.:|.:
  Fly   234 IKRFNQA---MTFPVRILQILRGTEHAAHSV---------------AAGILLLHEEYGISSVFSI 280

  Fly   158 FDEDVIEQVLKVFRLLEMNNNKSLRASMIWMFFLTICDDLKIVFRYVHFKEHL-KTRDRIIRCLL 221
                :|:.::...|:...:::.|...|.....|..|...|.:        .|| |..:.::.|..
  Fly   281 ----LIKSIVDALRMDSSDSSVSKHFSNFLAEFSNIAPSLIV--------PHLEKLAEDLLDCQS 333

  Fly   222 EVLYMNFKMGYQNTCAPGLHGKCFELFSEIANEHNGDVYETLHLIMRQTFPMHVYTDSPQMIAYG 286
            ..|         ..|...:.|.  .:.||:.:|   |:.|.|..: |..|..|:......:.|:.
  Fly   334 HTL---------RNCVLQIIGD--TVVSELTSE---DLSEELKEV-RNEFLEHLMAHILDISAHV 383

  Fly   287 RRGAMQSGEHISDW------FI---------QLIDKYPDIVNRILHFYIECVVSNPIKAWKSNDE 336
            |...:....|:...      |:         :|.||...:....:|.....:.|||..:..|.||
  Fly   384 RSKVLSIWHHLKTQHAIPLNFLTRVLEEAIGRLEDKSSLVRRAAMHLIKSALESNPYSSKLSIDE 448

  Fly   337 KVAIGYAAKYDRVL--FTKCNKSCADYVLEAVKA------DDAVGIQIRALDLIEKILLQESEVE 393
                 ..||::..:  ..|.|:     |||..:.      |:...:....|..||:.|.:..:::
  Fly   449 -----LRAKHEHEVQAMEKLNE-----VLEEERKQEEKLNDEFSSLAPELLPFIEENLTEFPDMQ 503

  Fly   394 WSIFRHEVSD---VPREVPLLRE--------VLRCL-------NDRTLTVRRKACQVLILALRQ- 439
               |..|.||   :.|.:||:||        ::|.:       |..:|....:.| |.:|||.: 
  Fly   504 ---FDKEESDETLMERIIPLMREKNYKDVIVLVRKVDFLAGNQNMSSLLKHEEHC-VYVLALLKT 564

  Fly   440 ------GSPMTKKILQESIRFVQF--DDTDVEAL---AEPS------AQQNELRFEKPGI--VQY 485
                  |...:.:.:.:.|:.|||  |..|...|   |.|.      ::.|...||...:  ..|
  Fly   565 YHLLAAGFKQSSEEMLQQIKTVQFLKDSIDFAVLMTSAFPKLHEMLMSKTNTDVFEAVDLFTTGY 629

  Fly   486 AFSFQGHE-------QL----ETEVKNLPQTVYQRFLAADNGLARSAGIALLERL---------- 529
            .|...|.|       ||    :.|.::.....|:|.|.:.:...|:..|.:::.|          
  Fly   630 MFGIHGTESGMQRMLQLVWSSDKEKRDAVSDAYKRVLFSTDQTGRAHAIKVVQNLSKFLSEIEYG 694

  Fly   530 ------------------------VLVNPLIIYNTNFVKETSLLAVDRL--SSVRKSALETIETL 568
                                    ||.....:.........|.|::..|  :|..||::.:..|.
  Fly   695 HYTALESLMTEWVLGGDIDAAVIQVLFERFTLKLEGTTSNESRLSLQLLIMASQSKSSIVSANTA 759

  Fly   569 L--------------EAYSNCFALIC----------VYCRIWACLMSDEDVA--LQKL------- 600
            :              ..:::|..|:.          .|.|    ..||.:..  :.:|       
  Fly   760 IIEDIAVGERVRRDPRIFTSCLQLLVNSIDANNTAKYYKR----QNSDAEFVGKITRLFLDFFFH 820

  Fly   601 -AISSFDRMVLKNIQPLEYSNEAKHFMPWRIISTLLMTQPRAYLQERFAVLL------ERETIVT 658
             ::..||.:.:...:......:|...:..::::.||.....::|.:..|.::      :.||:..
  Fly   821 RSLYDFDALAMSVFEYFYRMCQAPDVIAQQLVTALLKQFNESWLVKEAAAIVPSPDKADTETVPD 885

  Fly   659 PRLVNVIISHLSTSMATDA------WGLLL--FLSSRITNNMDALIG-------IFNGLSSY-NM 707
            .:.:.:..|...|...|.|      .|.|:  :|.||:.    ..||       ||..:..| ||
  Fly   886 SQPLEIPHSQTLTPTQTQADSQSQMQGTLIPVYLVSRLI----FCIGYMTIKEMIFLDMDIYNNM 946

  Fly   708 K-SNQFLALQLITGCLRNFSKPALNQLFQKLLNALRTGSIWLGIISSAVNLLNQIHHLST--SQS 769
            | .::..||:         .:...||......||.|     |.:..||:.:..::..::.  .|.
  Fly   947 KYRDELTALE---------ERKNRNQQAGSSHNAAR-----LTLNMSAMEVRKRLSGVAAEPQQE 997

  Fly   770 PTIASEMPYWQLSLLEDLVEGILSSAQNFQEEYARLQCLLGAYTELIVMVPQDVDNRIVSIVFKY 834
            |.             :|||..  ::..|..||      :.|...::::..|..:.:::...:.  
  Fly   998 PD-------------DDLVGA--TAEDNIAEE------IHGICEDMLLYNPDALLSKLAPFII-- 1039

  Fly   835 LQECTKLCESEFDSDNERMTNWMIVIAGRLSLRDNHLANSASKLYITI--LTKNDRPQIINTTLI 897
                 ::|:...:..:..:.....:...||....:....|.....:.|  ||||.|  |...|::
  Fly  1040 -----EICKRPGEFGDPTLQQAATLALARLMTVSSRFCESNMSFLMNILNLTKNIR--IKCNTVV 1097

  Fly   898 ALNDLGKKHPSILE---SNFQAILSKLQSKFAMTRVRTFRCVKDVILSGNIKLKGPILISMLAAL 959
            .|:||..:.|:|:|   .:|.|.|.:..::..:|.|   :.:..:||:..|::||.| ..|...:
  Fly  1098 GLSDLTFRFPNIIEPWTGHFYAQLHESNTELRLTAV---KMLSHLILNEMIRVKGQI-ADMALCI 1158

  Fly   960 VDESAEVAREADAFFTRYKKLYNKM-LFDHCLKECPFDLNDQAILRGVRTNGNYKSPLKGSQMAK 1023
            ||.:.|:......||   |::.||. :..:.|.:....|.|        .|.|...        .
  Fly  1159 VDGNEEIRNITKQFF---KEIANKSNILYNVLPDIISRLGD--------INLNLDE--------D 1204

  Fly  1024 KRRLLYNHIMSSMDENVLLLYFGQLKLLAEKT-------------RDQAF--------------- 1060
            |.|::.::|:..:.::      .|::.|.||.             ||.|:               
  Fly  1205 KYRIIMSYILGLIQKD------RQIETLVEKLCLRFPVTRVERQWRDIAYCLGLLTYNERAVKKL 1263

  Fly  1061 -----------------------INN------PDALIVVQDMLFIMRRICYCTKGMGKEKNSRGE 1096
                                   |:|      |:...||.:   ...|:..|.: :..:..::|:
  Fly  1264 MDNMQHYRDKVQVDEVYQSFKLIISNTNKLAKPELKAVVTE---FENRLNECLQ-VNPDTAAQGD 1324

  Fly  1097 GDNIDEGEDASSEPATPPT-----RPEAG-EATSRGRGRKA---DMSEE 1136
            .::..||: .:...|.|.|     :|.|. ..|.|||||:|   ..|||
  Fly  1325 QESTPEGQ-GNRTRAAPRTKKGGRKPAANRNNTVRGRGRRARRDSTSEE 1372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cap-D3NP_001162887.1 Cnd1 889..>999 CDD:289487 30/113 (27%)
Cap-D2NP_651709.1 Cnd1_N 77..243 CDD:289674 16/76 (21%)
COG5098 85..1269 CDD:227429 231/1239 (19%)
Cnd1 1091..1254 CDD:289487 43/191 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447779
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR14222
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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