DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cap-D3 and hcp-6

DIOPT Version :9

Sequence 1:NP_001162887.1 Gene:Cap-D3 / 33778 FlyBaseID:FBgn0051989 Length:1267 Species:Drosophila melanogaster
Sequence 2:NP_491537.1 Gene:hcp-6 / 266830 WormBaseID:WBGene00001833 Length:1758 Species:Caenorhabditis elegans


Alignment Length:1388 Identity:254/1388 - (18%)
Similarity:504/1388 - (36%) Gaps:359/1388 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 QLALNAATTYLLTLTIPGAKIFGVFDEDVIE----------QVLKVFRLLEMNN---NKSLRASM 185
            ::|:::|..||..||   .::|.....:...          :|::....|:::|   .:::||:.
 Worm   203 RIAVDSAERYLHHLT---TQLFAFLHSNTFSIDTPTLMSTLEVVEDIGRLDLDNRTAGRAIRANS 264

  Fly   186 IWMF-FLTICDDLKIVFRYVHFKEHLKTR-----DRIIRCLLEVLYMNFKMGYQNTCAPGLHGKC 244
            :..| .|....|....|.:...:...|||     .|:||..|.:      |.|     |....|.
 Worm   265 VHEFRSLERFTDRYCAFVHSLVESKYKTRAEVAYGRLIRPRLAL------MPY-----PDESNKS 318

  Fly   245 FELFSEIANEHNGDVYETLHL--IMR----------QTFPMHVYTDSPQMIAYGRRGAMQSGEHI 297
            .::.:|  .:.:|:::..|.|  |.|          ||..:.||:..|.:..:        ..:|
 Worm   319 SKISTE--RKRSGELHVNLILSRISRNPEARELKYIQTVTVMVYSQCPDLAEF--------RTNI 373

  Fly   298 SDWFIQLIDKYP-----DIVNRILHFYIECVVSNPIKAWKSNDEKVAIGYAAKYDRVLFTKCNKS 357
            :.:..::::..|     |.|.     ::..:........||...:::....:.:|   ||..:..
 Worm   374 ATFIHKILEALPYTYTYDFVQ-----FMNVLFKGRGAGVKSLSTELSSILISSFD---FTAPDPG 430

  Fly   358 C------------------ADYVLEAVKADDAVGIQIRAL----------DLIEKILLQESEVEW 394
            .                  .|...|.....|.|.::....          |..|.:..::.|.:.
 Worm   431 AIPNLDAEQNEEEDEEEEGEDEEEEEENEQDDVAVKEEEQSDKSDEENDGDNEENVSKKKEEKKK 495

  Fly   395 SIFRHEVSDVPR--EVPLLREV--LRCLNDRTLTVR----------------RKACQVLILALRQ 439
            .....||.:|.|  .:.:|..:  :.|| |:...:|                |:|.|:....:  
 Worm   496 EKKAKEVKEVGRMDAMSVLYNIVYMACL-DKAAAMRLHGANSLTKILQSQSHREAFQLFCATI-- 557

  Fly   440 GSPMTKKI------LQESIRFVQFDDTDVEALAEPSA---QQNELRFEKPGIVQYAFSFQGHEQL 495
            .:.|.:|.      |.||:     :|.:|...| ||:   :..:|..::..|:|.....:...:.
 Worm   558 NAEMDEKFGAVGDNLSESL-----EDLNVSGKA-PSSKTKKPTDLLLDEQQIIQKFNKLKLMNKG 616

  Fly   496 ETEV-KNLPQTVYQRFLAADNGLARSAGIALLERLVLVNPLIIYNTNFVKETS----------LL 549
            ||.| |::...:.:|....|....:.|..:||:..:          ::..|.|          :|
 Worm   617 ETRVEKDIVYMIVRRLSTDDKAPVKKAACSLLKSYL----------SYCDEASKFEVVLSILQML 671

  Fly   550 AVDRLSSVRKSALETIETLLEAYSNCF--ALICVYCRIWACLMSDEDVALQKLAISSFDRMVLKN 612
            ..||:.||||:..:....|:...:..|  :|...:......:::|.|..:.:.|    .::::|.
 Worm   672 CRDRMVSVRKTGADAFTELMLRDAILFKESLSSKWLHTLISMLNDTDNDVTEHA----RKLIMKV 732

  Fly   613 IQP-LEYSNEAKHFMPWRIISTL-LMTQPRAYLQE--RFAVLLERETIVTPRLVNVIISH-LSTS 672
            :.| ||.|::    :.|.::.|: .:|..|.||..  :.||   ||.:|...:::.:..| :|.|
 Worm   733 LTPLLENSSD----LTWTLLDTIESVTNHRQYLMSTLKDAV---REKLVKRTVMDSMKQHIISGS 790

  Fly   673 MATD-AWGLLLFLSSRITNNMDALIGIFNGLSSYNMKSN--QFLALQLITGCLRNFSKPALNQLF 734
            ...| ||.:...|..:...|:|..|..|:.: ..:.:||  |:: :.:|...::.......:.|.
 Worm   791 EKLDGAWMVFSQLCVQFEQNVDFAIETFSRV-DLSRESNLVQYM-IHVIENNIKKIDDDTKSDLV 853

  Fly   735 QKLLNALR--------TGSIW--LGIISSAVNLLNQIHHLSTSQSPTIASEMPYWQLSLLEDLVE 789
            ..|....|        :.||:  ||.:...:. ...:|          ..|...:..:||....:
 Worm   854 NTLQGTFRDYCLHPSHSRSIYHCLGKLMDGIG-DRSLH----------GKEFSDFGETLLIKCFD 907

  Fly   790 GILSSAQNFQ---------EEYARLQC-LLGAYTELIVMVPQDVD-----NRIVSIVFK------ 833
            .|:.|.:.|:         |...||.| .|...:|:....||.|.     .:.:|::..      
 Worm   908 TIVQSFEMFKDKDEWKRNSESQERLLCTALNVASEVFSYSPQLVPRHERLGKTLSLIVNSTENGS 972

  Fly   834 --------------YLQECTKLCE---SEFDSDNERMTNW------MIVIAGRLSLRDNHLANSA 875
                          :.:..|:|.|   |:..|....|::.      .:...|.::|.:..||:..
 Worm   973 SDASTVNPDMPSVHHTRPPTQLSEVPSSQKSSKGGMMSHEGAMFSDKVRAVGVVTLANMILAHDR 1037

  Fly   876 SKLYITILTK----NDRPQIINTTLIALNDLGKKHPSILESNFQAILSKLQSKFAMTRVRTFRCV 936
            ....:.:|.|    |...||.:..::|:.|:...:.:  :.....:.:.|.....:.|......:
 Worm  1038 LLKLMPMLVKQLQYNTAHQIRSNIVLAIGDICSSYKT--DRYAPMLAASLCDPSVIVRRHAINQI 1100

  Fly   937 KDVILSGNIKLKGPILISMLAALVDESAEVAREADAFFTRYKKLYNKMLFDHCLKECPFDLNDQA 1001
            ..:|..|..:..|.|:|.|:.|.:|.:.:|..:|..:.:...:......|.....:....|....
 Worm  1101 ARLISFGIFRFNGEIMIRMMLASLDANEDVRNDAKLYISEVLQSEEPNFFPLNFVQYMIALTQAR 1165

  Fly  1002 ILRGVRTNGNYKSPLK-----GSQMAKKRRL-LYNHIMSSMDENV---LLLYFGQLKLLAEKTRD 1057
            .|.||..:.:.:..:.     |..:|:..|: :|..::.|:|:..   :.:...| ::.......
 Worm  1166 RLVGVGHDEDDRGQVDVAIGGGDPLARPSRIAIYTFMIDSLDDRSRFDVKMSICQ-RIFTPIVNG 1229

  Fly  1058 QAFINNPDALIVVQDMLFIMRRICYCTK-GMGKEKNSRGEGDNIDEGEDASSEPATPPTRPEAGE 1121
            :...::.:...::.|.|.||.......| .:||..|           |:|..:|:     ||..|
 Worm  1230 EYDFSDYNVQCLLDDALLIMASNEMQVKMDVGKNPN-----------ENAMDDPS-----PEVLE 1278

  Fly  1122 ATSRGRGRKA--------------------DMSEEPLKQLERCL---RFVEETHRNIVPVM---- 1159
            |.: |..:|.                    :....||::  :||   |.:...|:|.:..:    
 Worm  1279 AAT-GFMQKVYLDHYMKTIVPSILSLREFLNQHRSPLQR--KCLLAIRMICIEHKNDIDEILQDN 1340

  Fly  1160 -----------------SPELSHNFESFCRAMA---------MRFPNYIEF-AQPAQFWRQFRSS 1197
                             :.|.:...:.:.:.:|         .:.|..:|. |:|.|      .|
 Worm  1341 RQLKDEMMFELQRVKQRTEEANRILDEYLKRVAEFKKQQKRLSKSPAPMELDAEPVQ------ES 1399

  Fly  1198 AKAPRASRSKRRRMEEGEVESHEEHE----SESDSDSELP---------LDRHKTTPTASRLSQ- 1248
            |:|.... |..||:||.:....||.|    .:.:.|:::|         ....|:||.|..||. 
 Worm  1400 AEAVEMG-SPARRIEEDQENVEEEVEMRTPQKKNPDADVPRTPLNALRSTTEEKSTPNARLLSPK 1463

  Fly  1249 -----RKTSCDMLVTELIFQPPD 1266
                 |::...::.||:...||:
 Worm  1464 TIKKIRRSLGALIHTEMRLNPPN 1486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cap-D3NP_001162887.1 Cnd1 889..>999 CDD:289487 18/109 (17%)
hcp-6NP_491537.1 HEAT repeat 629..653 CDD:293787 5/33 (15%)
HEAT repeat 663..696 CDD:293787 8/32 (25%)
HEAT repeat 1041..1070 CDD:293787 7/28 (25%)
Cnd1 1057..>1153 CDD:372266 16/97 (16%)
HEAT repeat 1079..1106 CDD:293787 3/26 (12%)
HEAT repeat 1115..1140 CDD:293787 7/24 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158922
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D39493at33208
OrthoFinder 1 1.000 - - FOG0006480
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14222
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.040

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