DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps52 and POK

DIOPT Version :9

Sequence 1:NP_608931.1 Gene:Vps52 / 33774 FlyBaseID:FBgn0031710 Length:662 Species:Drosophila melanogaster
Sequence 2:NP_565015.1 Gene:POK / 843468 AraportID:AT1G71270 Length:707 Species:Arabidopsis thaliana


Alignment Length:671 Identity:228/671 - (33%)
Similarity:395/671 - (58%) Gaps:30/671 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 QMTEQLDNEE-VREILKNTTDLRQYSRQIEKEFKEVENKSIEDYIAESQNIANLHNQINDCDDVL 71
            |..|:.:::| |..||.:...||:|::.:|...::||..||||||.||.|:.:||:||.|||.:|
plant    51 QELEECESDEVVANILSSGDKLREYAKGVENNLRKVELDSIEDYIKESDNLVSLHDQIRDCDSIL 115

  Fly    72 ERMENMLMSFQSVLNNISTEITQLQRKSVSMSLQLTNRQSVKAQLSQFIEDMAVSEEMINIIMET 136
            .:||.:|..||..:.:||::|..||.||:.|.|:|.||:..:::|::|:||:.|..:||::|::.
plant   116 SQMETLLSGFQEEIGSISSDIKILQEKSMDMGLRLKNRRVAESKLAKFVEDIIVPPKMIDVIVDG 180

  Fly   137 PVTERDFSTQLNVLNHKLSLVK-ELSFKESKSTSDVSDVLQKLRLKAMAKIRSYLLEQIYKFRKP 200
            .|.| ::...|.:|:.||..|: :.:.|.||:..||...|:|||.||::|:..::::::...|||
plant   181 EVNE-EYMKTLEILSKKLKFVEADQAVKSSKALKDVEPELEKLRQKAISKVYDFIVQKLIALRKP 244

  Fly   201 MTNYQI-PQNAMLKHKFFFEFILSNERHVAQEICSEYIDTMGKIYYSYFKSYSTRLTSLKFEESC 264
            .||.|| .|:.:||:|:...|:..:.:.|..::.:.|||||.|:..::|::|...|..|:. :..
plant   245 KTNIQILQQSVLLKYKYIISFLKEHGKEVFMDVRAAYIDTMNKVLSAHFRAYIQALEKLQL-DIA 308

  Fly   265 TKDDLMGIEDNASKGLFSKTTS-LKHKSTIFTIGKRGDILNQQLEAPIIVPH-AQLKN-RYTAEA 326
            |..||:|:|...: ||||:... ||::|.:|.:|.|..|: :.::.|.::|| |:..: :|..|.
plant   309 TAYDLIGVETRTT-GLFSRAREPLKNRSAVFALGDRIKII-KDIDQPALIPHIAEASSLKYPYEV 371

  Fly   327 LFRSEQYALVDNACREYLFVTEFFMVRGTQAQDLFNQIMGKTLTLMIKNLETSIHDCFDTIAMFL 391
            ||||....|:|.|..||:|..:||     ..:.:|.:|.....:::.::....:.:|||.|.:.|
plant   372 LFRSLHKLLMDTATSEYMFCDDFF-----GEESIFYEIFAGPFSVIDEHFNPVLSNCFDAIGLML 431

  Fly   392 CIHLIFRYQLMCHKRCVPALDKYWDSLQAVIWPRFELVFRLNIQSIHDCD-PTKFNKELGPHYIT 455
            .|.:|..:||:..:|.:|.||.|.|.:...:||||::||..::.|:.|.: .|.:..::.|||:.
plant   432 MIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFKMVFDSHLSSLRDANIKTLWEDDVHPHYVM 496

  Fly   456 RRYAEFSAAIVGISEHFPNELVSRLLLELQNEVECFILRMAAIFPTRKDQLIYLINNYDLVLGVL 520
            ||||||:|:.:.::..:.:..:...|..|:..|:..||::|.:||..|.|:::||||||:.:.||
plant   497 RRYAEFTASFIHLNVEYGDGQLDINLERLRMAVDGLILKLAKLFPRPKQQIVFLINNYDMTIAVL 561

  Fly   521 MEHTRDNSKEAEAFREQLNSRSAEYVEEILAPHFGGIIQFVKECEHFFEKEQMDELRKQERRSLA 585
            .|...:..|....|.|.|.|.::.:|||:|..||..:|:|||.     ...:...|..:...::|
plant   562 KEAGPEGGKIQMHFEEMLKSNTSLFVEELLVEHFSDLIKFVKN-----RASEDSSLNPERSITIA 621

  Fly   586 ----LVASFSANWKKSLEELNREVLLSFPSLLTGSQLLQLALASLVQYYHR----FHKLLTPNA- 641
                ||..|.:.||.::|.::::::.||.:.|.|..:|:.||..|:.||.|    ..|:...:| 
plant   622 EVEPLVKDFGSRWKTAIELMDKDIITSFSNFLCGMDILRAALTQLLLYYTRLTDCIKKIDGGSAL 686

  Fly   642 RAQLTNIHVVMVEIKKYKSNY 662
            ...|.:|..:|.||:||...:
plant   687 NRDLVSIQSIMYEIRKYSKTF 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps52NP_608931.1 Vps52 42..546 CDD:282044 180/509 (35%)
POKNP_565015.1 Vps52 86..587 CDD:282044 180/509 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 326 1.000 Domainoid score I267
eggNOG 1 0.900 - - E1_KOG1961
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5756
Inparanoid 1 1.050 398 1.000 Inparanoid score I474
OMA 1 1.010 - - QHG54348
OrthoDB 1 1.010 - - D158568at2759
OrthoFinder 1 1.000 - - FOG0003722
OrthoInspector 1 1.000 - - otm3107
orthoMCL 1 0.900 - - OOG6_101848
Panther 1 1.100 - - LDO PTHR14190
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3644
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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