DRSC/TRiP Functional Genomics Resources

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Protein Alignment mid and tbr1

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_001072587.1 Gene:tbr1 / 780042 XenbaseID:XB-GENE-942241 Length:677 Species:Xenopus tropicalis


Alignment Length:700 Identity:191/700 - (27%)
Similarity:267/700 - (38%) Gaps:193/700 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LVGSHPYLCNGVPAAPAAPNASGQTTTTASKSAAGSATDFSIAAIMAREDASSRESSIRSASPIS 66
            :.||:|:        ||||..:                 .....|::..|...|.|.::.|:...
 Frog    20 VTGSYPH--------PAAPELA-----------------LHDHPIISSADNLERSSPLKKATVRG 59

  Fly    67 VEDEVDVDVVDCSDAEEPPTKARR--LNHHQHHQHHQHHHNNNNNNNNNNVAHKSRNSGGAVAQT 129
            :.::.:.|  ..|.|::.|...:|  |:..........|..:.:..:...:...|::...|.|.|
 Frog    60 MTNQSEAD--SFSGAKDAPGDGQRSKLSPVLDGVSEIRHSFDGSAADRYLLPQSSQSQSAASAPT 122

  Fly   130 ASA---ESQLNTS----STSSQGRC------------------STPPQSPGTEDSEERLTPEPVQ 169
            .:.   .||...:    |..|.||.                  |.|...|.......:......|
 Frog   123 TTMFPYPSQHGAAHPAFSLGSPGRYMAHHPVIANGAYNSLLGNSAPQGYPSAGYPYSQQYGHSYQ 187

  Fly   170 KAPKIVGSCNCDDLKP--VQCHLETKELWDRFHDLGTEMIITKTGRRMFPTVRVSFSGPLRQIQP 232
            .||....|.....|.|  .|.:|..:.||.:||...|||||||.||||||.:..:.||    :.|
 Frog   188 AAPFYQFSATQPGLVPGKAQVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISG----LDP 248

  Fly   233 ADRYAVLMDIIPMDSKRYRYAYHRSAWLVAGKADP-APPARLYAHPDSPFSCEALRKQVISFEKV 296
            ...|.:.:|:|..|...:|  :....|:..||||. ....|:|.|||||.:.....:|.|||.|:
 Frog   249 TAHYNIFVDVILADPNHWR--FQGGKWVPCGKADTNVQGNRVYMHPDSPNTGAHWMRQEISFGKM 311

  Fly   297 KLTNNE--MDKNGQ-IVLNSMHRYQPRIHLVRLSH-GQSIPSNPKELQDLDHKTYVFPETVFTAV 357
            |||||:  .:.||| :||.|:|:||||:|:|.::. |....|.|..:|     |:.||||.|.||
 Frog   312 KLTNNKGASNNNGQMVVLQSLHKYQPRLHVVEVNEDGTEDTSQPGRVQ-----TFTFPETQFIAV 371

  Fly   358 TAYQNQLITKLKIDSNPFAKGFRDS----------SRLTDFDRD------------PMEALLLEQ 400
            |||||..||:||||.|||||||||:          .|||....|            .|.:..|:.
 Frog   372 TAYQNTDITQLKIDHNPFAKGFRDNYDTIYTGCDLDRLTPSPNDSPRSQIVPGARYSMASTFLQD 436

  Fly   401 QLRS--------PLRLFPDP-----------LM--QQFAAQGDPSSMALF-EKARQHLQM----- 438
            |..|        |....|.|           |:  ||....|.||....| ..|...|..     
 Frog   437 QFVSNYAKSRFHPPGAVPGPGTDRSVPHTNGLLSPQQGEDPGAPSPQRWFVTPANNRLDFTSASA 501

  Fly   439 ------FGGNSPYAQLMMPQMYQAAAAAAGPPP-------------PPPGLGAFHMFQQQWPQ-- 482
                  |.||:  |.|:   .|.||...|.|.|             .|.|.||     :..||  
 Frog   502 YDAATDFAGNA--ATLL---SYAAAGVKALPLPGGGCTARPLGYYSDPTGWGA-----RSPPQYC 556

  Fly   483 ----------LTAGFLASANQQAAAAQAAAQAQAQAQAAAAAMAANRTP---------PPPPTAS 528
                      .|.|.:|:.|.....::   :.::.|....:.:..:..|         ..||:..
 Frog   557 TKSGSVLPCWATGGRMAATNPYLTGSE---EVESLAATDRSPLGEDTKPKDLSDSSWIETPPSIK 618

  Fly   529 TPSSTSSGSPSPDMRPRQYQRFSPYQLPGGQGPPSSAAGSPPAVNASRSP 578
            :..|:.||......|    :|.||               |.|||:.|.||
 Frog   619 SMDSSDSGIYEQAKR----RRLSP---------------SDPAVSGSSSP 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 95/215 (44%)
tbr1NP_001072587.1 TBOX 205..398 CDD:238106 94/203 (46%)
T-box_assoc 420..675 CDD:292794 54/261 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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