DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mid and TBX1

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:XP_016884414.1 Gene:TBX1 / 6899 HGNCID:11592 Length:545 Species:Homo sapiens


Alignment Length:620 Identity:199/620 - (32%)
Similarity:254/620 - (40%) Gaps:188/620 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VPAAPAAPNASGQTT-----TTASKSAAGSATDFSIAAIMAREDASSRESSIRSASPISVEDEVD 72
            :|.:||..:.|..|.     |.:|.|:.|:|..|..||....:....||       |.......|
Human    44 LPGSPAGMHFSTVTRDMEAFTASSLSSLGAAGGFPGAASPGADPYGPRE-------PPPPPPRYD 101

  Fly    73 VDVVDCSDAEEPPTKARRLNHHQHHQHHQHHHNNNNNNNNNNVAHKSRNSGGAVAQTASAESQLN 137
            ........|..||....                          |:....:.|| |.:|:||    
Human   102 PCAAAAPGAPGPPPPPH--------------------------AYPFAPAAGA-ATSAAAE---- 135

  Fly   138 TSSTSSQGRCSTPPQSPGTEDSEERLTPEPVQKAPKIVGSCNCDDLKPVQCHLETKELWDRFHDL 202
                         |:.||.  |.......||:|..|:.|         |...||.|.|||.|:.|
Human   136 -------------PEGPGA--SCAAAAKAPVKKNAKVAG---------VSVQLEMKALWDEFNQL 176

  Fly   203 GTEMIITKTGRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRYRYAYHRSAWLVAGKADP 267
            |||||:||.|||||||.:|...|    :.|...|.:|||.:|:|.||||||:|.|:|||||||||
Human   177 GTEMIVTKAGRRMFPTFQVKLFG----MDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADP 237

  Fly   268 APPARLYAHPDSPFSCEALRKQVISFEKVKLTNNEMDKNGQIVLNSMHRYQPRIHLVRLSHGQSI 332
            |.|.|::.|||||.......||::||:|:|||||.:|.||.|:||||||||||.|:|.:...:..
Human   238 ATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRKDS 302

  Fly   333 PSNPKELQDLDHKTYVFPETVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFDRDPMEALL 397
            ....:|    :.||:||.||.|||||||||..||:|||.||||||||||... .|:.|:.....|
Human   303 EKYAEE----NFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGFRDCDP-EDWPRNHRPGAL 362

  Fly   398 LEQQLRSPLRLFPDPLMQQFAAQ----GDPSSMALFEK----ARQHLQMFGGNSPYAQLMMPQMY 454
                          |||..||..    ..|:..:..||    ||:..|...|             
Human   363 --------------PLMSAFARSRNPVASPTQPSGTEKDAAEARREFQRDAG------------- 400

  Fly   455 QAAAAAAGPPPPPPGLGAFHMFQQQWPQLTAGFLASANQQAAAAQAAAQAQAQAQAAAAAMAANR 519
              ..|..|.|..|             |||.|..|:.:                  ...|..|...
Human   401 --GPAVLGDPAHP-------------PQLLARVLSPS------------------LPGAGGAGGL 432

  Fly   520 TPPPPPTASTPSSTSSGSPSPDMR-------------PRQY------------QRFSPYQLPGGQ 559
            .|.|......||     .|:|::|             |.:|            .|.:||.|||.:
Human   433 VPLPGAPGGRPS-----PPNPELRLEAPGASEPLHHHPYKYPAAAYDHYLGAKSRPAPYPLPGLR 492

  Fly   560 G--------------PPSSAAGSPPAVNASRSPAH 580
            |              |.|.||.:..|..|:.:.|:
Human   493 GHGYHPHAHPHHHHHPVSPAAAAAAAAAAAAAAAN 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 114/198 (58%)
TBX1XP_016884414.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141529
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.740

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