DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mid and tbx2

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_001030291.1 Gene:tbx2 / 619588 XenbaseID:XB-GENE-1018115 Length:685 Species:Xenopus tropicalis


Alignment Length:611 Identity:182/611 - (29%)
Similarity:248/611 - (40%) Gaps:215/611 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 SAESQLNTSSTSSQGRCSTPPQSPGTEDSEERLTPEPVQKAPKIVGSCNCDDLKPVQCHLETKEL 195
            :||:.|:.|:.....:.:........|..||      |:..||:.              ||.|||
 Frog    60 AAEAGLHVSALGHHHQAAHLRSLKSLEPEEE------VEDDPKVT--------------LEAKEL 104

  Fly   196 WDRFHDLGTEMIITKTGRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRYRYAYHRSAWL 260
            ||:||.|||||:|||:||||||..:|..||    :....:|.:||||:..|..||:  :|.|.|:
 Frog   105 WDQFHKLGTEMVITKSGRRMFPPFKVRVSG----LDKKAKYILLMDIVAADDCRYK--FHNSRWM 163

  Fly   261 VAGKADPAPPARLYAHPDSPFSCEALRKQVISFEKVKLTNNEMDKNGQIVLNSMHRYQPRIHLVR 325
            |||||||..|.|:|.|||||.:.|....:.::|.|:|||||..||:|..:|||||:||||.|:||
 Frog   164 VAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVR 228

  Fly   326 LSHGQSIPSNPKELQDLDHKTYVFPETVFTAVTAYQNQLITKLKIDSNPFAKGFRD--------- 381
            .:....:|.:       ..:|||||||.|.|||||||..||:||||:|||||||||         
 Frog   229 ANDILKLPYS-------TFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDTGNGRREKR 286

  Fly   382 ------SSRLTD----FDRDPMEALLL-------EQQLRSPLRLFPDPLM-------QQFAAQGD 422
                  |.|:.:    .|||..|:...       ...|.|||...|.||.       ::|.|..|
 Frog   287 KQLSLPSLRMYEEQCKADRDGAESDASSCDPAPGRDSLHSPLSTEPSPLRLHRSNREEKFGADSD 351

  Fly   423 ----------------------PSSMALFEKARQ-----------HLQMFGGNSPYA-------- 446
                                  |||..|.::.:.           ..:..||::.::        
 Frog   352 QELDRREVRTARSHSPVGHRSPPSSPRLEDRGKDKNTPEKKSESPESRKDGGDNVFSRSLEKDKG 416

  Fly   447 -------------------QLMMPQMYQAAAAAAGPPPPPPGLGAFHM---------FQQQWPQL 483
                               :...|.|.|..:        ||.|.|.|:         .||.:..|
 Frog   417 ESRRKEDSKSDPECGSLSKETFAPLMVQTDS--------PPHLSASHLQSLALSGLHGQQFFNPL 473

  Fly   484 TA-----------------------GFLASANQQAAAAQAAAQAQAQAQAAAAA--------MAA 517
            .|                       |.|.::...|:|....:.:..|....||.        |.|
 Frog   474 NAAQPLFIHPGQFTMGPGAFSAMGMGHLLASMTGASALDNGSLSSVQGATGAATFPFHLSQHMLA 538

  Fly   518 NRTPPPP-----------------PTASTPSSTSSGSPSP------DMRPRQYQRFSPYQLPGGQ 559
            ::..|.|                 ..||...:||:.:..|      ..|||  .||:|||:|   
 Frog   539 SQGIPMPAFGGLFPYPYTYMAAAAAAASAMPATSAATTMPRNPFLSSTRPR--LRFNPYQIP--- 598

  Fly   560 GPPSSAAGSPPAVN-------ASRSP 578
                  .|.||:.|       ||.:|
 Frog   599 ------VGIPPSTNLLTTGLSASLNP 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 107/213 (50%)
tbx2NP_001030291.1 T-box 97..277 CDD:366363 104/206 (50%)
T-box 99..277 104/190 (55%)
TBX 295..370 CDD:372213 15/74 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 606..660 4/13 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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