DRSC/TRiP Functional Genomics Resources

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Protein Alignment mid and tbx3

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_001027524.1 Gene:tbx3 / 613116 XenbaseID:XB-GENE-1018231 Length:701 Species:Xenopus tropicalis


Alignment Length:468 Identity:155/468 - (33%)
Similarity:217/468 - (46%) Gaps:97/468 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 GAVAQ------TASAESQLNTSSTSSQGRCSTPPQSPGTEDSEERLTP-EPVQKAPKIVGSCNCD 181
            ||:|:      ..:||:.:..||...|......|.        :.|.| |.|:..||:       
 Frog    57 GALAKPIMDQLVGAAETGIPFSSLGHQAAAHLRPL--------KTLEPEEEVEDDPKV------- 106

  Fly   182 DLKPVQCHLETKELWDRFHDLGTEMIITKTGRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMD 246
                   |||.|:||::||..||||:|||:||||||..:|..||    :....:|.:||||:..|
 Frog   107 -------HLEGKDLWEQFHKRGTEMVITKSGRRMFPPFKVRCSG----LDKKAKYILLMDIVAAD 160

  Fly   247 SKRYRYAYHRSAWLVAGKADPAPPARLYAHPDSPFSCEALRKQVISFEKVKLTNNEMDKNGQIVL 311
            ..||:  :|.|.|:|||||||..|.|:|.|||||.:.|....:|::|.|:|||||..||:|..:|
 Frog   161 DCRYK--FHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTIL 223

  Fly   312 NSMHRYQPRIHLVRLSHGQSIPSNPKELQDLDHKTYVFPETVFTAVTAYQNQLITKLKIDSNPFA 376
            ||||:||||.|:||.:....:|.:       ..:|||||||.|.|||||||..||:||||:||||
 Frog   224 NSMHKYQPRFHIVRANDILKLPYS-------TFRTYVFPETEFIAVTAYQNDKITQLKIDNNPFA 281

  Fly   377 KGFRDSSRLTDFDRDPMEALLLEQQLRSPLRLFPDPLMQQFAAQGDPSSMALFEKARQHLQMFGG 441
            |||||:.   :..|:..:.|.|:.     :|.:.|...:...:..:.||.....|.         
 Frog   282 KGFRDTG---NGRREKRKQLALQS-----MRPYDDHQKKDNGSSDESSSEQTAYKC--------- 329

  Fly   442 NSPYAQLMMPQMYQAAAAAAGPPPPPPGLGAFHMFQQQWPQLTAGFLASANQQAAAAQAAAQAQA 506
               :||...|.......::....||..|........:..|........|........:.|     
 Frog   330 ---FAQTSSPTAPAVGTSSLKGVPPSDGESDEESRDEGGPDTGESTKISTTTSEDCRELA----- 386

  Fly   507 QAQAAAAAMAANRTPPPPP-----TASTPSSTSSGSPSPDMRPRQYQRFSPYQLPGGQGPPSSAA 566
                         :||..|     :.|...|:.:|..|||      .|.||..:      .||::
 Frog   387 -------------SPPRAPHSDLGSRSREQSSRTGKSSPD------SRHSPGHI------SSSSS 426

  Fly   567 GSPPAVNASRSPA 579
            |...::...:|||
 Frog   427 GRILSIEELKSPA 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 105/198 (53%)
tbx3NP_001027524.1 T-box 106..286 CDD:366363 103/206 (50%)
TBX 304..384 CDD:372213 13/91 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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