DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mid and tbr1b

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_001108562.1 Gene:tbr1b / 58042 ZFINID:ZDB-GENE-000323-1 Length:676 Species:Danio rerio


Alignment Length:655 Identity:190/655 - (29%)
Similarity:261/655 - (39%) Gaps:166/655 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLVGSHPYLCNGVPAAPAAPNA-----------SGQTTTTASKSAAGSATDFSIAAIMAREDASS 54
            |:|||      |.|.|.|:..|           :.:.::...|::|| .|:.|.|...|....||
Zfish    18 MIVGS------GYPNAQASELALQDYPIISIGDNLERSSPLKKNSAG-MTNQSEADNFADSKDSS 75

  Fly    55 RESSIRSASPISVEDEVDVDVV-------DCSDAEE---------PPTKARRLNHHQHH------ 97
            .:......||       |:|.|       |.|..|.         .|:......:...|      
Zfish    76 GDVQRGKLSP-------DLDGVADSRHTFDGSAGERYLLSQSSQVQPSPTTMFPYPSQHGPTHPA 133

  Fly    98 ------QHHQHHHNNNNNNNNNNVAHKSRNSGGAVAQTASAESQLNTSSTSSQGRCSTPPQSPGT 156
                  ..:..||....|...|::...|...|.|.|....|:...:....::..:.|:       
Zfish   134 FSIASPSRYMAHHPVITNGAYNSLLSNSSPQGYATAGYPYAQQYGHAYQGTAFYQFSS------- 191

  Fly   157 EDSEERLTPEPVQKAPKIVGSCNCDDLKPVQCHLETKELWDRFHDLGTEMIITKTGRRMFPTVRV 221
              ::..|.|...|     |..||             :.||.:||...|||||||.||||||.:..
Zfish   192 --AQAGLVPGKAQ-----VYLCN-------------RALWLKFHRHQTEMIITKQGRRMFPFLSF 236

  Fly   222 SFSGPLRQIQPADRYAVLMDIIPMDSKRYRYAYHRSAWLVAGKADP-APPARLYAHPDSPFSCEA 285
            :.||    :.|...|.:.:|:|..|...:|  :....|:..||||. ....|:|.|||||.:...
Zfish   237 NISG----LDPTAHYNIFVDVILADPNHWR--FQGGKWVPCGKADTNVTGNRVYMHPDSPNTGAH 295

  Fly   286 LRKQVISFEKVKLTNNE--MDKNGQ-IVLNSMHRYQPRIHLVRLSH-GQSIPSNPKELQDLDHKT 346
            ..:|.|||.|:|||||:  .:..|| :||.|:|:||||:|:|:::. |....|.|..:|     |
Zfish   296 WMRQEISFGKLKLTNNKGATNNTGQMVVLQSLHKYQPRLHVVQVNEDGTEDTSQPGRVQ-----T 355

  Fly   347 YVFPETVFTAVTAYQNQLITKLKIDSNPFAKGFRDS----------SRLTDFDRDPMEALLLEQQ 401
            :.||||.|.|||||||..||:||||.|||||||||:          .|||....|...:.::...
Zfish   356 FTFPETQFIAVTAYQNTDITQLKIDHNPFAKGFRDNYDTVYTGCDIDRLTPSPGDSPRSQIMPSA 420

  Fly   402 LRSPLRLFPDPLMQQFAAQGDPSSMALFEKARQHLQMFGG-----NSPYA-QLMMPQMYQAAAAA 460
            ..:....|   |..||.:.        :.|:|.|..:.|.     :.|.: .|:.||..:....|
Zfish   421 RYAMTGSF---LQDQFVSS--------YAKSRFHPGVGGAPGTDRSVPLSNSLLSPQQTEETTVA 474

  Fly   461 AGPPPPPPGLGAFHMFQQQWPQLTAG----FLASANQQAAAAQAAAQAQAQAQAAAAAMAA---- 517
            :               .|:|....|.    |.|||...||||..|..|......|||.:.|    
Zfish   475 S---------------PQRWFVTPANNRLDFAASAYDAAAAADFAGNAATLLSYAAAGVKALPLP 524

  Fly   518 -----NR------TPP------PPPTASTPSSTSSGSPSPDMRPRQYQRFSPYQLPG-GQGPPSS 564
                 ||      .||      ||...|..||..|..||..:..|  ...|.|.:|| ..|.|.:
Zfish   525 GAGCSNRPLGYYGEPPGWGTRTPPQYCSKSSSVLSCWPSNSVGSR--TTASSYLVPGLEDGDPIA 587

  Fly   565 AAGSP 569
            ...||
Zfish   588 PERSP 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 91/213 (43%)
tbr1bNP_001108562.1 TBOX 200..393 CDD:238106 95/221 (43%)
T-box_assoc 415..673 CDD:292794 51/206 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574514
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.