DRSC/TRiP Functional Genomics Resources

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Protein Alignment mid and tbxt

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_001008139.1 Gene:tbxt / 493501 XenbaseID:XB-GENE-478789 Length:434 Species:Xenopus tropicalis


Alignment Length:416 Identity:131/416 - (31%)
Similarity:188/416 - (45%) Gaps:86/416 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 KPVQCHLETKELWDRFHDLGTEMIITKTGRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSK 248
            |.::..||.::||.||.:|..|||:||.||||||.::||.||    :.|...|..|:|.:..|:.
 Frog    40 KELKVSLEERDLWMRFKELTNEMIVTKNGRRMFPVLKVSVSG----LDPNAMYTFLLDFVAADNH 100

  Fly   249 RYRYAYHRSAWLVAGKADPAPPARLYAHPDSPFSCEALRKQVISFEKVKLTNNEMDKNGQIVLNS 313
            |::|.  ...|:..||.:|..|:.:|.|||||.......|..:||.||||| |:|:..|||:|||
 Frog   101 RWKYV--NGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLT-NKMNGGGQIMLNS 162

  Fly   314 MHRYQPRIHLVRLSHGQSIPSNPKELQDLDHKTYVFPETVFTAVTAYQNQLITKLKIDSNPFAKG 378
            :|:|:||||:||:...|.:.:           ::.||||.|.|||||||:.||.|||..|||||.
 Frog   163 LHKYEPRIHIVRVGGTQRMIT-----------SHSFPETQFIAVTAYQNEEITALKIKHNPFAKA 216

  Fly   379 FRDSSRLTDFDRDPMEALLLEQQLRSPLRLFPDPLMQQFAAQGDPSSMALFEKARQHLQMFGGN- 442
            |.|:....|: :|.::                         :|..|..:.|.:....|...||: 
 Frog   217 FLDAKERNDY-KDILD-------------------------EGIDSQHSNFSQLGTWLIPNGGSL 255

  Fly   443 ---SPYAQLMMP---------QMYQAAAAAAGPPPPPPGLGAFHMFQQQWPQLTAGFLASANQQA 495
               :|:.|...|         :.|.:.......|.|.|     ::.:...|...|.     |..|
 Frog   256 CSPNPHTQFGAPISLSSPHGCERYSSLRNHRSAPYPSP-----YVHRNNSPNNLAD-----NSSA 310

  Fly   496 AAAQAAAQ---AQAQAQAAAAAMAANRTPPPPPTAS-------------TPSSTSSGSPSPDMRP 544
            ..:...:.   :..|..|....:..:.:...|||:|             ||.|.|.|..:.  ..
 Frog   311 CLSMLQSHDNWSTLQMPAHTGMLPMSHSAGTPPTSSQYPSLWSVSNSTLTPVSQSGGITNG--IS 373

  Fly   545 RQYQRFS-PYQLPGGQGPPSSAAGSP 569
            .||.|.| |:........||.|.|||
 Frog   374 SQYLRGSTPHYSSLSHAVPSPATGSP 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 89/198 (45%)
tbxtNP_001008139.1 T-box 44..219 CDD:307177 88/192 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1201455at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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