DRSC/TRiP Functional Genomics Resources

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Protein Alignment mid and Tbx6

DIOPT Version :10

Sequence 1:NP_608927.2 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:XP_038941217.1 Gene:Tbx6 / 365371 RGDID:1307716 Length:463 Species:Rattus norvegicus


Alignment Length:450 Identity:153/450 - (34%)
Similarity:209/450 - (46%) Gaps:104/450 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 STPPQSPGTEDSEERLTPEPVQKAPKIVGSCNCDDLKPVQCHLETKELWDRFHDLGTEMIITKTG 212
            :.||..|....:   |.||.....|:.:.|     |..|...||.:|||..|..:||||||||.|
  Rat    61 AAPPPLPLLPSA---LGPETAPPPPEALHS-----LPGVSLSLENQELWKEFSAVGTEMIITKAG 117

  Fly   213 RRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRYRY-AYHRSAWLVAGKADPAPPARLYAH 276
            |||||..|||.:|    :.|..||..|:|::|:|..|||: ..|   |..:|||:|..|.|:|.|
  Rat   118 RRMFPACRVSVTG----LDPEARYLFLLDVVPVDGARYRWQGQH---WEPSGKAEPRLPDRVYIH 175

  Fly   277 PDSPFSCEALRKQVISFEKVKLTNNEMDKNGQIVLNSMHRYQPRIHLVRLS-----HGQSIPSNP 336
            ||||.:.....:|.:||.:|||||:.:|.:|.::|:|||:|||||||||.:     |...:.|  
  Rat   176 PDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRATQLCSQHWGGVAS-- 238

  Fly   337 KELQDLDHKTYVFPETVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFDRDPMEALLLEQQ 401
                      :.||||.|.:||||||..||:|||.:||||||||::.|....:||..    ::::
  Rat   239 ----------FRFPETTFISVTAYQNPRITQLKIAANPFAKGFRENGRNCKRERDAR----VKRK 289

  Fly   402 LRSPLRLFPDPLMQQFAAQGD---PSSMALFEKARQHLQMFGGNSPYAQLMMPQMYQAAAAAAGP 463
            ||.     |:|:..:....|.   |..|.      .:|:.  |.||    ..|.:..::....||
  Rat   290 LRG-----PEPVATEACGSGGECCPGGMG------PNLRK--GASP----SQPVLSVSSDTPGGP 337

  Fly   464 -------------PPPPPGLGAFHMFQQQWPQLTAGFLASANQQAAAAQAAAQAQAQAQAAAAAM 515
                         |.|.|                      ..|:||:|.|.......|:|.....
  Rat   338 CDSTLGGDIRDSDPEPAP----------------------TPQEAASASAPPCGGPSAEAYLLHP 380

  Fly   516 AANRTPP---PPPTASTPSSTSSGSPSPDMRPRQYQRFSPYQLPGGQGPPSSAAGSPPAV 572
            ||....|   |..|.|.|.:...|.|:|         :|...|....||.|||..:.|:|
  Rat   381 AAFHGAPSHLPARTPSFPEAPDPGRPAP---------YSAAFLELQPGPGSSAYQTTPSV 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_608927.2 T-box_TBX20-like 186..382 CDD:410319 98/201 (49%)
Tbx6XP_038941217.1 T-box_TBX6 91..273 CDD:410322 97/200 (49%)
PHA03247 <293..453 CDD:223021 40/181 (22%)

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